Pseudomonas putida ND6: YSA_08079
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Entry
YSA_08079 CDS
T02170
Name
(GenBank) sigma-54 dependent transcription regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi02020
Two-component system
ppi02025
Biofilm formation - Pseudomonas aeruginosa
ppi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
YSA_08079
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
YSA_08079
09142 Cell motility
02040 Flagellar assembly
YSA_08079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppi03000
]
YSA_08079
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ppi02035
]
YSA_08079
Transcription factors [BR:
ppi03000
]
Prokaryotic type
Helix-turn-helix
Other families
YSA_08079
Bacterial motility proteins [BR:
ppi02035
]
Flagellar system
Flagellar assembly proteins
Others
YSA_08079
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
AAA_22
AAA_7
nSTAND3
AAA
bpMoxR
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AFK71138
UniProt:
I3V067
LinkDB
All DBs
Position
4361848..4363323
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AA seq
491 aa
AA seq
DB search
MWRETKILLIDDDSARRRDLAVVLNFLGEENLACASHDWQQAVEPLSSSREVLCVLIGTV
NAPGNLLGLLKTVATWDEFLPVLLLGEISSAELPEDLRRRVLSNLEMPPSYSQLLDSLHR
AQVYREMYDQARERGRQREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK
EVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIEDGTFR
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGWPG
NVRELANLVERMAIMHPYGVIGVSELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHTPN
FSNHAMLPPEGLDLKDYLGSLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
SRQGGEEQAED
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtgaaaccaagattctgctgatcgatgacgacagcgcgcgccgccgcgacctt
gcggtggtgctgaacttcctcggcgaagaaaacctcgcatgtgccagccatgactggcag
caggcggtcgagccattgtcctcgagccgcgaagtgctgtgcgtgctcatcggcaccgtg
aatgctccgggcaatctccttgggctgcttaagacagtggctacctgggatgagttcctt
ccggttctgcttttaggtgaaatttcttctgccgagctgccggaagaccttcgccgccgg
gtgctttccaacctggaaatgccgccaagctacagccagctgctggattcgctgcaccgt
gcccaggtttaccgcgaaatgtacgaccaggcgcgcgagcgcggtcgccagcgcgagccc
aatctgttccgtagcctggtgggcaccagccgtgccattcagcacgtgcggcaaatgatg
cagcaagtggcggataccgacgccagcgtgctgatcctgggtgagtcgggcaccggcaag
gaagtggtagcgcgcaacctgcactaccattccaagcgccgtgaagcgccgttcgtgccg
gtcaactgtggcgcgatcccggccgagctgctggaaagcgaactgttcggccacgagaag
ggcgcctttaccggggccatcaccagccgtgccgggcgtttcgagctggccaacggcggt
accctgttcctcgacgaaatcggcgacatgccgttgccgatgcaggtcaagctgctgcgt
gtgctgcaggagcgtaccttcgagcgcgtgggtagcaacaagacccagagcatcgacgtg
cgcatcatcgctgcgacgcacaagaacctcgaaaccatgatcgaggacggcaccttccgc
gaagacctgtactaccgcctgaacgtgtttcctatcgaaatggcgccgctgcgtgagcgg
gtggaagacatcccgttgctgatgaacgagctgatttcgcgcatggagcacgagaagcgc
ggttccattcgcttcaattccgcctcgatcatgtcgctgtgtcgtcacggctggccgggt
aacgtgcgcgagctggccaacctggtcgagcgcatggcgatcatgcacccgtacggggtc
attggcgtgtcggaactgccgaagaaattccgctatgtcgatgacgaagacgagcagatg
gtcgacagcctgcgcagcgacctggaagagcgcgtggcgatcaatggccacacacccaat
ttcagcaaccacgccatgctgccgcccgaaggcctggacctcaaggactacctgggtagc
ctggagcagggcctgatccagcaggcgctggacgatgccaacggtatcgttgcgcgcgcg
gctgaacgtttgcgtattcgccgtaccaccctggtcgagaaaatgcgcaagtacggcatg
agccgccagggtggcgaggaacaggccgaggattga
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