Pseudomonas putida ND6: YSA_09899
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Entry
YSA_09899 CDS
T02170
Name
(GenBank) DEAD 2 domain-containing protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppi
Pseudomonas putida ND6
Pathway
ppi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
YSA_09899
09124 Replication and repair
03420 Nucleotide excision repair
YSA_09899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppi03021
]
YSA_09899
03036 Chromosome and associated proteins [BR:
ppi03036
]
YSA_09899
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_09899
Enzymes [BR:
ppi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
YSA_09899
Transcription machinery [BR:
ppi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
YSA_09899
Chromosome and associated proteins [BR:
ppi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
YSA_09899
DNA repair and recombination proteins [BR:
ppi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
YSA_09899
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
DUF7711
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AFK72145
UniProt:
I3V324
LinkDB
All DBs
Position
5320758..5323019
Genome browser
AA seq
753 aa
AA seq
DB search
MSYSVAVRALCEFSAKVGDLDLRFTPSPTAQEGIEGHQRVVARRAAGYESEIALEGQFET
LRVRGRADGYDPGSNRLEEIKTHRGDLARQPANHRQLHWAQAKVYGWLMCQARQLPAIEV
ALVYLDVDSDSQTLFTEHCSAAELQAFFETQCQRFLGWARSQQRRLADRDQGLLALSFPY
PQFRKGQRQLAETLYKAVSTGRCLMAQASTGIGKTLGTLFPLLKAMVPQQLDKLFFLTAK
TPGRALALDALRQITEATPQPALRTLELIARDKACEYPDKACHGESCPLAAGFYDRLPAA
REAAAALPLLDRANLREVALAHQVCPYYLGQEMARWADVLVADYNYYFDAHALLFGLTQL
NQWRVAVLVDEAHNLVERGRGMYSASLDQGQLLALRQSKPPGLVSALDRLNRQWNALYKE
QRAPYQASESLPEGLLRALQQCVGVIQEQMNQAPTHIDPQVLQFFYQALQFCRVAELFDE
HFLFDISQRQGPRKRRLATLCLRNVTPARLLAPRMQAARSVTLFSATLSPRHFYSDLLGM
PADTAWLDVAAPFRAEQLEVRIASQVSTRYQQRQASLAPIVDLIARQYERMPGNYLAFFS
SFEYLQQVAGLLAEQHGQIPLWSQEPGMDEAARQAFLDRFVADGRGVGFAVLGGAFGEGV
DLPGTRLIGAFVATLGLPQVNPVNEQFKQRLGRQFGAGFDYAYLYPGVRKVIQAAGRVIR
GDQDRGVLVLIDERFAEPRVQQMFPGWWAAAIV
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
ttgagctacagcgtagcggtgcgcgccttgtgtgagttcagcgccaaggtcggcgacctg
gacctgcgcttcacgccatcgcccaccgcccaggagggtatcgaagggcatcagcgggtg
gtggcacggcgggctgctggctacgagtcggaaatcgcccttgaaggccagttcgaaacc
ctcagggtgcggggccgcgccgatggctatgaccctggcagcaatcgcctggaagagatc
aagacgcaccgtggcgacctggcgcgtcaaccggccaatcaccgtcagttgcactgggca
caggccaaggtttatggctggttgatgtgccaggcacgacaactgcccgccatcgaggtg
gcgctggtgtacctcgacgtggacagcgacagccagacgctgttcacggagcactgttcg
gctgccgagctgcaggccttcttcgaaacccagtgccagcgctttctgggctgggcccga
tcgcagcaacgacgcctggccgaccgtgaccaaggcctgctggcgctgagtttcccctac
ccacagttccgaaagggccagcggcagttggctgaaaccttatacaaagcggtgagcacc
ggccgttgcctgatggcccaggccagcaccggcattggcaaaacccttggtaccttgttc
ccgctgctgaaggccatggtgccgcagcagctggacaagctgttttttctcaccgccaag
acaccaggccgggcactcgccctggatgccctgcgccagatcaccgaggccacgccgcaa
cctgccctgcgcacattggagttgatcgcccgcgacaaagcctgtgagtacccggacaag
gcctgtcatggtgagtcctgcccattggccgcaggtttctacgaccgtttgccggctgcg
cgcgaggctgcggcagcactgccgttgctcgaccgcgccaacctgcgtgaagtggccttg
gcgcaccaggtgtgcccgtactacctgggccaggagatggcgcgctgggccgacgtgctg
gtcgccgactacaactactacttcgatgcgcatgctttgctgttcggcctgacccagctc
aaccagtggcgagtggcagtactggtggacgaagcgcataacctggtcgagcgtgggcgc
ggcatgtacagcgccagccttgaccagggccagctgctggcgttgcgccagagcaaaccg
cctgggctggtcagtgcgctggaccgcctgaacaggcaatggaacgccctgtataaagag
cagcgtgcgccgtaccaggccagcgagtcgctgcccgaaggcctgctgcgcgccctgcag
cagtgcgtcggggtgattcaggaacagatgaaccaggcccccacgcacatcgacccccag
gtgttgcagttcttctatcaggccttgcagttctgccgggttgccgagctgttcgacgag
cactttctgttcgacatcagccagcgccagggcccgcgcaagcggcggctggccacgctg
tgcctgcgcaatgtcaccccggcgcggctgctggcaccacgcatgcaggcggcgcgcagt
gtgacgctgttttccgccacgttgagcccacggcacttctacagcgacctgctgggcatg
ccagccgataccgcttggctggacgtggccgcgccgttccgtgccgaacagctggaggtg
cgcattgccagccaggtgtccacccgttaccagcagcgccaagcctccctggcgccgatc
gttgacctgattgcccggcagtatgagcgtatgccgggtaactacctggcgttcttcagc
agtttcgaatacctgcaacaggtggcagggctgttggccgagcagcatgggcagattcca
ctgtggtcacaggagccgggcatggacgaggcagctcgccaggcatttctcgatcgcttt
gtcgccgatggtcgaggtgtgggctttgctgtattgggcggcgctttcggcgaaggggtg
gatttgcccggcacgcggctgattggtgcgtttgtcgctaccctggggctgcctcaggtc
aacccggtcaacgagcagttcaaacagcgcctggggcggcaatttggcgcgggtttcgat
tacgcgtacctctacccgggcgtgcgcaaggtgatccaggcggcgggccgggttattcgg
ggtgaccaggaccgtggcgtactggtgctgattgacgaacgcttcgccgagccccgggtt
cagcagatgtttccagggtggtgggcggcggctattgtctag
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