Pseudomonas putida ND6: YSA_p00035
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Entry
YSA_p00035 CDS
T02170
Name
(GenBank) putative DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppi
Pseudomonas putida ND6
Brite
KEGG Orthology (KO) [BR:
ppi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppi03032
]
YSA_p00035
03400 DNA repair and recombination proteins [BR:
ppi03400
]
YSA_p00035
Enzymes [BR:
ppi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
YSA_p00035
DNA replication proteins [BR:
ppi03032
]
Prokaryotic type
DNA Topoisomerases
YSA_p00035
DNA repair and recombination proteins [BR:
ppi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
YSA_p00035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AFK72963
UniProt:
I3V5E2
LinkDB
All DBs
Position
pND6-2:15858..17435
Genome browser
AA seq
525 aa
AA seq
DB search
MGRDLVIIEAPGKLRTFRRLCEGVGLQADICATIGHVLEAPKDLRDLGIALRGEEYVETN
RRPIREDSFRYLCDCLARCKGRVLIATDNDQEGHVIAADVVSLMDATGCRQPAYRLTLNG
LSTDAMVKGLAQLCPVDIALANAGIARRIVDRLIGGGLSDFSTGRTVGRVQTALLSIAEH
GLPHSLIGLSMPCSNGGEPFRAVLPVTGVATPAELIAQLDALPAREVAVATPERLSEPGN
YGDTLLSLNAAAGLSISQAAELLQELYEAGDISYPRTSSRAFSDATVEVLEALSKVRGIR
AFRKAAVPTIQLDGVAHEAIHVLNSELLQRLDLGRPPSLQGSLREAALSIIARQSLESGL
VVARERPNLDGLPDFLTSLDWSRDARRPMLPWRPASSVTTKGGALGLDAALVQQMMKHGV
GRPSTWPSHAARFAERGFVDDAYQLTTKGLRVLEAAPQGLRDVLCTARIEDLLQQRGSEV
SHMVNHALQVALEGDAELAAQLISQLDVLQDEQEEELEHRHRPAF
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggggcgggatcttgtgatcattgaggcgcctggaaagcttcggactttccggcgccta
tgtgagggtgtcggcctgcaggccgacatttgcgcgaccatcggccacgttctggaagcg
ccgaaggacctgcgcgatctcggcatcgctctgcggggcgaggaatatgtggaaaccaat
cggcgccccatccgcgaagattcatttcggtacctgtgcgattgcctggcacgttgcaaa
gggcgagtgctgattgctaccgacaatgatcaagaaggccatgtaatcgctgctgatgtc
gtcagcctcatggacgctactggctgcaggcagccagcgtatcgcttgacactcaacggt
ctcagcactgatgcgatggtaaaggggctggctcagctgtgtccggttgatatcgcattg
gccaatgccggaattgcacggcggattgtcgatcgactcatcggtggggggctatctgat
ttttcaacggggcgaaccgttggccgagttcagaccgctctcctctcgatcgccgagcat
ggactgcctcacagcctgatagggctgtcgatgccgtgctcgaacggtggtgagccattt
cgagcggttctccctgttactggcgtagctaccccggccgagcttatcgcgcaactcgat
gcgttgccggcgcgtgaggtcgcggtggcaacacctgagcgactgagcgaaccaggcaat
tatggcgataccctgctgtcactcaatgctgcagcagggctgagcatctcccaggcggcg
gagctgctgcaggagctctacgaggctggtgacatttcctatcctcgtacatcgtcgcgt
gccttcagtgatgcgacggttgaggtgctggaggcgctctccaaggtgcgagggatccgg
gcgttccgtaaagccgcagttccgaccatccagttggacggggtcgctcatgaggcgatc
cacgtgctgaacagcgagctgttgcagcgactggatctggggcgtcctccctctctgcag
ggcagcctgcgagaggcggcgttatccattattgcgagacagtcattggagtctgggctg
gtggttgcccgcgagcgtccgaatctggacggcctgcctgatttcctcacgagcctggat
tggagtcgggatgcgcggcggccgatgctcccttggcggcctgcctcttcggtcacaacg
aagggcggtgcacttgggctcgatgccgccctggtgcaacaaatgatgaagcacggtgtt
ggtcgtcccagcacatggccgtcccatgctgctcgcttcgccgagcgcggcttcgtcgac
gacgcctatcagctgacgactaaggggctacgagtacttgaagctgctccgcaggggctt
cgagatgttctctgtacggccaggatcgaggacttgctgcagcagcgtggcagcgaagtt
tcacacatggtcaaccatgccctgcaggttgccctggagggcgatgccgagttggctgct
cagctgatcagccagctggatgttttgcaggacgaacaggaagaagaacttgaacaccgt
caccgccctgctttctag
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integrated database retrieval system
