Phaeobacter piscinae: PhaeoP14_00865
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Entry
PhaeoP14_00865 CDS
T05105
Name
(GenBank) Superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppic
Phaeobacter piscinae
Pathway
ppic03420
Nucleotide excision repair
ppic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PhaeoP14_00865
03430 Mismatch repair
PhaeoP14_00865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppic03400
]
PhaeoP14_00865
Enzymes [BR:
ppic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PhaeoP14_00865
DNA repair and recombination proteins [BR:
ppic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PhaeoP14_00865
MMR (mismatch excision repair)
Other MMR factors
PhaeoP14_00865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
MerC
Motif
Other DBs
NCBI-ProteinID:
ATG38979
LinkDB
All DBs
Position
924909..927416
Genome browser
AA seq
835 aa
AA seq
DB search
MPHRAVFLGTALTSRRRHKRHISYREFGVEQTVNALFPPGLNRANVPLMSSFDDIDPYEG
ISLSARAMAARPMPYLDGLNPAQRAAVECLEGPVLMLAGAGTGKTKALTARIVHLLTTGI
AKPNEILAVTFTNKAAREMKERVAGMLGQAVEGMPWLGTFHSICVKLLRRHAELVGLKSN
FTILDTDDQIRLLKQLIKAEGIDDKRWPARMLAGVIDDWKNRALTPSKVPVSDASAYNHR
GVDFYAQYQARLKDLNAVDFGDLLLHMVTIFQDNPDVLEQYQRWFRFIMVDEYQDTNVAQ
YLWLRLLAGAHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGANVVRLEQNYRSTEHI
LSAASGVIRGNSGRLGKELWTEARGGEKVRLIGHWDGEEEARWIGEEIEAMQRGTRGLAP
VDLNNMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRLVVSADDD
LAFERIVNTPKRGLGDKAQQTIQTMARSNGVSLVEGARLAVESGQIKGKGGNALRQLVTD
LARWGRLAGDADMTHMELAETILDESGYTTMWQTDKNPDSPGRLENLKELVKALEAFENL
QGFLEHVSLIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGLK
GLEEERRLAYVGITRAEEICTISFAGNRRVFGQWQSQLPSRFIDELPEEHVEVLTPPGLY
GGGYGAAAPGGGGGAVRSTIEDRMAAADGYNSPGWKRMQSRAGERGLSQPKESKSSVIDL
TATSAFMVGERVFHQKFGYGAITGIEGDKLEVDFEKAGTKKVVARFVSAAEDVPF
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaccgcgcggtctttcttggcacggcgctgacatcccgcaggcggcacaagcgc
cacatctcgtaccgtgaatttggggtggaacagactgtgaacgccctctttccgccggga
ttgaatcgcgctaatgtcccgctcatgagcagttttgacgatatcgacccctatgagggg
atctcgctgtccgcgcgcgccatggcagcgcggccgatgccgtatctcgacgggctgaac
ccggcacagcgggccgccgttgaatgcctggagggacctgtgctgatgctggccggggcc
ggcaccggcaagacgaaggcgctgactgcgcgcatcgtgcatcttctgaccacgggcatc
gccaaaccaaatgagatccttgctgtgacctttaccaacaaggccgcgcgcgagatgaag
gagcgggttgcaggcatgttggggcaggcggttgaggggatgccctggcttggcaccttc
cattcgatctgcgtgaagctgctgcgccgccatgccgaattggtcgggctcaaatccaat
ttcaccattctggataccgatgatcagatccgcctgctgaaacagctgatcaaggcggaa
ggcattgatgacaaacgctggcccgcgcgcatgctggcaggtgtcatagacgattggaaa
aaccgcgcgctgacgccgtcgaaagtgccggtgtccgatgccagtgcctacaaccatcgc
ggcgtggatttctacgcccagtatcaggcgcggctgaaggatctgaacgcggtcgatttt
ggtgatctactgctgcatatggtcaccatatttcaggataacccggatgtgctggagcaa
tatcagcgttggttccgcttcatcatggtggacgaatatcaggataccaacgtggcgcag
tacctctggctgcggctgctggcgggcgcccataagaacatctgctgcgtcggtgacgat
gatcagtcgatctatggctggcgcggcgcagaggtgggcaatatcctgcggtttgaaaag
gattttcccggcgccaatgtggtgcggctggaacaaaactaccgctcgactgaacatatt
ctcagcgccgcctctggtgtgatccgtggcaattccggccgtctgggcaaggagctgtgg
accgaggcgcgcggcggcgagaaggtccgcctgatcggtcattgggacggcgaggaggag
gcccgctggatcggcgaggagattgaggcgatgcagcgcggcacccgtggcctggcgccg
gtcgatctcaacaatatggccatcctcgtccgggcctcgcatcagatgcgcgcctttgag
gatcggtttctgaccatcggcttgccgtaccgggtcattggcgggccacgcttttatgag
cggctcgaaattcgcgatgccatggcctatttccggctggtggtcagtgctgacgatgat
cttgcctttgagcggatcgtcaacacgccgaagcgcggccttggcgataaggcgcagcag
accattcagaccatggcgcgcagcaatggcgtctccctggtggagggcgcgcggcttgcg
gttgaatccggccagatcaaggggaagggtggcaatgccctgcgccagctggtcaccgac
cttgcccgctgggggcgtctggcgggggatgcggatatgacccatatggagctggccgaa
accattctggatgaaagcggctacaccaccatgtggcagaccgacaaaaacccggattcg
ccggggcgtctggaaaacctcaaggaactggtgaaggcgctggaggcgtttgaaaacctg
caaggcttcctcgaacatgtcagtctgatcatggacaatgacaaacaggacgccgcccaa
aaggtgtcgatcatgacactgcacgccgccaaagggttggaatttccggctgtgttcttg
cctggctgggaggatgggctgttcccttcgcagcgctccatggatgaaagcggcctgaag
ggcctcgaggaggagcgccgtttggcctatgtcggcatcacccgggccgaggaaatctgc
accatctcctttgccggcaatcgccgcgtctttgggcaatggcagtcacagctgccctcc
cgcttcattgatgagctgccggaagaacatgtggaggtgctgaccccgcccggtctttat
ggtggcggctacggggctgcggcccccggcggtggtggtggggcggtgcgctccacgatt
gaggatcgcatggcagccgccgacgggtacaactcgcccggctggaagcgcatgcaatcc
cgcgccggtgagcgtggtctgtcacagcccaaggaaagcaaatccagcgtcatcgacctc
accgcgacatccgccttcatggtcggggagcgggtgtttcaccagaaatttggctatggc
gcgatcaccgggatcgaaggcgacaaactggaggtggatttcgagaaggctggcaccaag
aaagtcgtcgcccgctttgtctccgcagcggaggacgtgcccttttaa
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