Phaeobacter piscinae: PhaeoP14_01249
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Entry
PhaeoP14_01249 CDS
T05105
Name
(GenBank) putative ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppic
Phaeobacter piscinae
Brite
KEGG Orthology (KO) [BR:
ppic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppic03016
]
PhaeoP14_01249
Enzymes [BR:
ppic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PhaeoP14_01249
Transfer RNA biogenesis [BR:
ppic03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PhaeoP14_01249
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ATG39359
UniProt:
A0AAN1LA57
LinkDB
All DBs
Position
1328926..1330083
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AA seq
385 aa
AA seq
DB search
MKTLTSTEDLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGNENAVLVDPL
ADGLSLEPLYELFRNESVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVCGFGEQVG
YETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTGRAR
WVEEELQVLTDPATYDVDPQEAWRRVKTRTNSGKFLAVVRELAAFRETYAKTNNVPRNRV
FKDDALVELASTKPKNASDLGNSRLLLREARKGAIAEGILQAVAKGVECPAGSQPQPDRS
REKLQVNPALADLLRVLLKAKTEASGVAAKLIAPSSDLDAIAAGQRNVPALKGWRLEVFG
ADALRLCNGEIALAAKGQDVKVVTL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactctgacctctaccgaagacctgcaggccttttgcgaagctgcagcgcagcat
gattatgtcacggtggataccgagtttctgcgagagcggacatattattccaagctatgt
ctggtgcagctggcctatcccggcgccgggaatgaaaatgcggtgctggtggatccgctt
gcggacgggctgtcgctggagccgctgtatgagctgtttcgtaatgaatccgtagtgaag
gtctttcacgccgcgcgtcaggacctggagattttctgggttgatgcacaggtctttcca
aaaccgctgtttgacacacaggttgcggccatggtctgcggctttggtgagcaggtcggc
tatgaaaccttggtgcgcaaaatcgtcaaacaggggttggacaagacgtcgcgcttcacc
gactggtcccgtaggccgctgagcgacgcgcagaaaacctatgcgctggcggatgtgacc
catctgcgccagatctatgaatatcttgccgctgagctgaaacgcaccggtcgcgcccgt
tgggtcgaggaagaactgcaggtgctcaccgatccggcaacctatgatgtcgaccctcag
gaggcctggcggcgggtgaaaacccgcaccaactccggcaagtttctggccgttgtgcgc
gaattggcggcgttccgcgaaacctacgccaagaccaacaatgtgccacgcaaccgggtg
ttcaaggatgacgcgctggttgaactggcctcgaccaagcccaagaacgcctcggatctt
ggaaattcgcggctgctgctgcgcgaagcgcgcaaaggggccatcgccgaagggatcctt
caggccgtggccaagggtgtggagtgcccggcaggatcgcagccgcaacctgatcgcagc
cgtgaaaaactgcaggtgaacccggcgctggccgatttgctgcgggtgctgttgaaggcc
aagaccgaagcctccggcgtcgctgcgaaactgatcgcgcccagttcggatctggacgcg
attgctgccggtcagcggaatgttcccgccctcaaaggctggcgtcttgaggtcttcggc
gccgatgcgctgcgtctgtgcaatggtgaaatcgccctggcggcaaaggggcaggacgtg
aaggtcgtcacgctctga
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