Phaeobacter piscinae: PhaeoP14_01266
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Entry
PhaeoP14_01266 CDS
T05105
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppic
Phaeobacter piscinae
Pathway
ppic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PhaeoP14_01266 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppic03019
]
PhaeoP14_01266 (rne)
03009 Ribosome biogenesis [BR:
ppic03009
]
PhaeoP14_01266 (rne)
Enzymes [BR:
ppic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PhaeoP14_01266 (rne)
Messenger RNA biogenesis [BR:
ppic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PhaeoP14_01266 (rne)
Ribosome biogenesis [BR:
ppic03009
]
Prokaryotic type
rRNA processing factors
PhaeoP14_01266 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ATG39374
LinkDB
All DBs
Position
1345086..1348019
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AA seq
977 aa
AA seq
DB search
MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEDAKPAKRQSRSRRGRTK
AAEVKSADVVETKDVSPETAENGADIAGMETIDLTDEVAAAETKLAEVPEAAQTEAAAAD
DATVAEPVVEEAVKEVSGTPEAQDASAETGEAEGAADTATPEADDAAEDAESDDSADKDA
GADATAKDENIESVADEDDSEDIRPVRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGA
ALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIAVELDVPTGAGLIVRTAGA
KRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVLVEG
ERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFARFQVESYLGAMFNPTVQLKSGGYIVIG
VTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERK
NNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIR
SDDSLALSILRQIEEEGTRRRSREVLVRCPVSIANYLMNQKREHIAQIETRYGLSVRIEG
DPHLVSPDFSLEKFKTASRVVPVAAAPVVSVDTSIMDQVDADEAHDEADEAEAETNDADV
AEVQTAGDEGEGDNKPKRKRRRRRRRKSSGGDGDDSNNAAQADANADDQTASDDAAADEA
DAKAEPAESTDAKEGEGDGEVKKRTRTRTRSRSRKKKTDETVTAESDVPVETDAKAEPVA
EVKEVVEDAKAEDSKPAEAPVVESAETPAEAAAEPAALNGDAAAEVPAAAAEAETAAVAE
EAAPSQIVADEATAEDVVADQDTPAAEETAPEADEPQTAEASTEEVETAPEPELATADAE
PASPPKPKRRGWWSVGS
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgcttattgatgccacccacgcggaagagacccgcgtcgtggtggtcgacggaaacaag
gttgaggaatttgactttgaatccgaaaacaaacgccagcttgctggcaatatctacctc
gcaaaagtaacccgcgtcgaaccgtcgctgcaggcggcttttgtggactatggcggcaac
cgccatggcttcctcgcgttttcggaaattcaccccgactactatcagatcccggtcgcc
gaccgtgaggcgctgatggaagaagagcgcgcctatgcagaggcacagcgcgcgcgtgat
gacgaagaggatgccaaacctgccaagcggcagtcgcggtcgcgtcgtggccggaccaaa
gctgcggaggtgaaatccgcggacgtggtcgagaccaaggacgtcagccccgaaaccgct
gaaaacggcgctgatatcgcgggtatggaaaccattgacctgaccgatgaggtcgcagcc
gccgagaccaagctggcggaggttcctgaggccgctcaaacggaggccgctgccgccgat
gacgcgaccgtcgctgagccggttgtggaagaggccgtcaaagaggtctcaggcacacct
gaggcgcaggacgcatccgctgagaccggtgaggccgagggcgcggcagatacggcgaca
cctgaggcggatgacgccgcagaggacgcggagtctgatgacagtgccgataaggacgct
ggtgcagatgcgacggcgaaggatgagaatatcgaatccgtcgccgatgaggatgacagc
gaagatattcgcccggtacgcaaaccgcgtccgcgtcgctacaaaattcaggaagtgatc
aaggttcgtcaggtcctgctcgttcaggtcgtgaaagaggaacgcggcaacaagggcgct
gccctcaccacctatctgtcgctggctggccgttactgcgtgctgatgcccaacaccgcg
cgcggtggtggcatctcccgcaagatcaccaatgccgccgaccgcaaaaagctgaaggac
atcgccgttgaactcgacgtgccgaccggcgccgggcttattgtccgcaccgcgggcgcc
aaacgcaccaaatccgagatcaagcgcgactatgaatatctgcagcgcctgtgggaacag
atccgcgagctgacgctgaaatccatcgcgcccgcgaagatctacgaagaaggcgatctg
atcaaacgctcgatccgcgatctttacagccgcgagattgacgaggttctggttgagggc
gaacgcggctaccgcatcgccaaggacttcatgaagatgatcatgccgtcccacgccaag
aacgtgaaaaactatcaggaccagctgccgctgttcgcgcgcttccaggtcgaaagctac
ctcggcgcgatgttcaatccgacggtgcagctgaaatccggtggctatatcgtgattggc
gtcaccgaggcactggtggccatcgacgtgaactccggccgcgccaccaaggaaggctcg
atcgaggagaccgcgctgaagaccaacctggaggccgccgaagaagtggcccgccagctg
cgtttgcgcgaccttgccggtcttattgtcatcgacttcatcgacatggacgagcgcaag
aacaacgccgccgtcgaaaagcgcatgaaggacaagctgaagaccgaccgtgcccgtatt
caggtgggccggatctctggctttggcctgatggaaatgtcgcgtcagcgtctgcgtccc
ggcatgatcgaggcgacaaccgcgccttgcccgcattgccatggtaccggcctgatccgc
tcggatgactcgctggcattgtcgatcctgcgccagatcgaggaggaaggcacccgccgt
cgctcccgcgaggtgctggtgcgctgcccggtcagcattgccaactatctgatgaaccag
aagcgcgagcatatcgcccagatcgaaacccgctacggtctgtccgtgcggatcgaaggg
gacccgcatctggtcagcccggatttctcgcttgagaagttcaagaccgcgtcccgcgtg
gtgcctgttgccgcagcgcctgtggtgtccgtcgatacctcgatcatggatcaggttgat
gcggatgaggcgcatgacgaggcggatgaggccgaggctgaaaccaatgacgccgacgtc
gcagaggtacagaccgcaggtgatgagggcgagggcgacaataaacccaagcgcaagcgt
cgccgtcggcgtcgccggaaatcctccggtggggacggtgatgacagcaacaacgccgct
caggctgatgcaaacgcggacgaccagacggcgtcggatgacgccgctgcggacgaggcc
gacgccaaggctgagccagcagagagcaccgatgccaaagagggcgagggtgacggtgag
gtgaagaagcgcacccgcacccggacccgctcgcgcagccgcaagaagaagactgacgag
acagtcacagctgagtccgacgtcccggtggagacggacgccaaggcagagcctgtggct
gaggtcaaagaggtggttgaggacgcaaaggcagaggacagcaaacctgccgaggctccg
gttgttgagagcgctgagacgcccgctgaggctgctgcggaacccgcagcgctgaacggt
gacgccgccgcagaggtgcccgccgccgccgccgaagcagagaccgccgccgtagctgag
gaggccgcaccgagccagatcgtggcggatgaggccaccgctgaggatgttgtcgcagat
caggacacccctgccgctgaggaaacagcgccagaggctgacgagccacagaccgcagag
gcctcgacggaagaggtagagacagccccggagccggagctggccaccgctgatgccgaa
ccggcaagcccgccgaagccgaaacggcgcggctggtggtcggttggcagctga
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