Phaeobacter piscinae: PhaeoP14_02909
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Entry
PhaeoP14_02909 CDS
T05105
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppic
Phaeobacter piscinae
Pathway
ppic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PhaeoP14_02909 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppic03021
]
PhaeoP14_02909 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppic03400
]
PhaeoP14_02909 (rpoC)
Enzymes [BR:
ppic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PhaeoP14_02909 (rpoC)
Transcription machinery [BR:
ppic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PhaeoP14_02909 (rpoC)
DNA repair and recombination proteins [BR:
ppic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PhaeoP14_02909 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
ATG40960
UniProt:
A0AAN1LBQ0
LinkDB
All DBs
Position
complement(3047136..3051377)
Genome browser
AA seq
1413 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDQFGMDAFT
ANIGAEAIREMLAAIDLEAEAEHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMPGEGKIFGTIDEVQHAL
DAGEVHLHTKITARITQIDEEGNEVLKRFETTPGRVRLGALLPKNVKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGTISADKRNEAGAVMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRDRDCGTEAAITAEAAVNDGEVVASLGERILGRV
AAEDIKKPGTEEIIVAVGQLIDERMADAVEEAGVQSTRIRSPLTCEAEEGVCAQCYGRDL
ARGTQVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFEMPQ
TLENANGETLVVGRNMKLIIQDEHGEERASHKLGYGSKLFVKEGQTVARGDKLFEWDPYT
LPIIAEKPGTAKYVDLVSGIAVRDETDEATGMTQKIVIDWRAAPKGSDLKPEIILVDGDG
EPVRSDAGNPLTYPMSVDAILSVEEGQQIMAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADESMEPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ISDSGDTTLLKGEHVDKQEFDTANEKALARGKRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQRVRNIAQSRDNVVLDARRE
EAEAAAALAAPSMDDVATEDSLDNLVETPESRD
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaataatccgttcaacccgctcacgccgccgaaggtctttgat
gagatcaaggtgtcgctggcatcgcccgagcggatcctgtcgtggtcctacggcgagatc
aaaaagccggaaaccatcaactaccggacgttcaaacccgaacgcgacggtctgttctgc
gcgcgcatctttggcccgatcaaagactacgaatgtctgtgcggcaaatataagcgcatg
aaatatcgcggcgttgtctgcgaaaaatgcggtgtggaagtcaccctgcaaaaggtccgc
cgcgagcgcatgggccacatcgagctggcgtcgccggttgcgcatatctggttcctcaag
tcgctgccgtcgcgcatcggcctgatgctggacatgactctgcgcgatctggagcgggtt
ctgtatttcgaaaactacgttgtcatcgagccgggtctgaccgacctcacctacggccag
atgatgaccgaagaagaatacatggacgctcaggaccagttcggcatggacgccttcacc
gccaacatcggcgctgaagcgatccgtgaaatgctggccgcgatcgatctggaagctgaa
gccgagcatctgcgcgcagagctggccgaagccacaggcgaactgaagcccaagaagatc
atcaagcgcctgaaggtggttgaaagcttcctggaatccggcaaccgcccggaatggatg
gtcatgaccgtcattcccgtgatcccgccggaactgcgcccgctggtgccgctggacggg
ggccgttttgcgacctccgacctgaacgacctgtaccgccgtgtgatcaaccggaacaac
cgtctgaagcgtctgatcgaactgcgcgcacccgacatcatcgtccgcaacgaaaagcgg
atgttgcaggaatccgtggacgctctgttcgacaacggccgtcgtggccgcgtgatcacg
ggcgccaacaagcgtccgctgaaatcgctgtccgacatgctgaaaggtaagcagggtcgc
ttccgtcagaaccttttgggtaagcgggtcgacttctccggtcgttcggtcattgtgacc
ggccccgagctgaagctgcaccagtgcggtctaccgaaaaagatggcgctcgaactgttc
aagcccttcatctattcgcgtctggaggccaaaggtctgtcctccaccgtgaaacaggcg
aagaagctggtcgaaaaagagcgccccgaagtgtgggatatcctcgatgaggttattcgc
gaacatccggtgatgttgaaccgtgcgccgacgctgcaccgtcttggcattcaggcgttt
gaacccacgctgatcgaaggtaaagctattcagctgcacccgctggtctgctcggcgttc
aacgcggacttcgacggtgaccagatggcggttcacgttccgctgagccttgaggcccag
ctggaagcgcgtgttctgatgatgtctacgaacaacgttctgtcgcccgccaacggcgcg
ccgatcatcgttccttcgcaggatatgatcctgggtctctactatgtgaccctggaacgt
gaaggcatgcccggtgaaggcaagatctttgggaccatcgacgaggttcagcacgcgctg
gacgccggcgaagtgcacctgcacaccaagatcacagcgcggatcacccagatcgacgaa
gaaggcaacgaggttctcaagcgttttgagaccaccccgggccgggtccgtctgggcgcg
ttgctgccgaaaaacgtcaaggcaccgtttgagctggtcaaccgtcttctgcggaagaaa
gaggttcagcaggtcattgacaccgtctaccgttactgcggtcagaaagagtccgtgatc
ttctgtgatcagatcatgaccatgggcttccgtgaagcgttcaaggcgggcatttcgttc
ggcaaggacgacatggtgatccccgacaccaaatggacgctggtcgatgagacccgcgat
caggtgaaggacttcgaacagcagtacatggacggcctgatcactcagggtgaaaagtac
aacaaagttgtcgatgcctggtcgaagtgtaacgacaaggtcaccgatgcgatgatgggc
accatctccgcagacaagcgcaacgaggctggcgccgtgatggaaccgaactcggtttac
atgatggctcactccggtgcgcgtggctcggtcacccagatgaaacagctgggcgggatg
cgcggcctgatggcgaagccgaatggcgacatcatcgagaccccgatcatctcgaacttt
aaagaaggtctgaccgttctcgagtacttcaactcgacccacggtgcccgtaagggtctg
tcggacaccgctctgaagactgcgaactcgggttacctgacccgtcgtctggttgacgtg
gcacaggactgcatcgtgcgcgatcgtgactgtggcaccgaggccgcgatcactgctgag
gcagcggtcaacgacggtgaggttgtggcgtcgcttggcgagcgtattctgggtcgtgtt
gcggctgaggatatcaagaagccgggcaccgaggagatcatcgtggccgttggccagctg
atcgacgagcgcatggcagatgcagtggaagaggccggcgttcagtcgacccgtatccgc
tcgccgctgacctgtgaggccgaagaaggcgtttgtgcccagtgctatggccgtgacctg
gcccgtggtacgcaggtgaacaccggtgaagctgtcggcatcatcgccgcgcagtcgatc
ggtgaacccggtacacagctgacgatgcggaccttccacatcggcggcgttgctcagggt
ggccagcagtctttcctcgaagcctcgcaagagggcaagatcgtcttcgagatgccgcag
accctggaaaacgccaacggcgagaccctggttgttgggcggaacatgaagctgatcatt
caggacgagcacggggaagagcgcgccagccacaagctgggttacggctccaaactgttc
gtcaaggaaggccagaccgtggcccgtggcgacaagctgttcgaatgggatccctacacc
ctgccgatcatcgccgagaaacccggtaccgcaaaatatgtggacctggtctccggtatc
gctgtgcgggatgagaccgacgaagccaccggcatgacccagaagatcgtgatcgactgg
cgtgcggctcccaagggctctgacctcaagcctgaaatcatcctggtggatggcgatggc
gagccggtgcgcagcgatgcgggcaacccgctgacctatccgatgtccgtggacgccatc
ctgtcggtcgaagaaggccagcagatcatggcaggtgacgttgtcgcgcgtatcccgcgc
gaaggcgccaagaccaaggacatcaccggtggtctgccacgggttgcggaactgttcgaa
gcccgtcgtcccaaggatcacgcgatcatcgctgaaatcgatggttacgtgcgctttggc
cgcgactataagaacaagcgccgcatctcgatcgagcctgctgatgagtcgatggagccc
gtcgaatacatggtgcccaagggcaagcacattccggttcaggaaggtgacttcgtccag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctgtccattatgggt
gtcgaggctctggcgaactacatgatcgacgaggttcaggacgtctatcgcctgcagggt
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagtgggag
atctccgactccggtgacacaacgctgctgaaaggtgagcatgtggacaagcaggagttc
gacaccgccaacgagaaggcgctggcccgtggcaagcgtcctgctcaaggtgagccgatc
ctcttgggtatcaccaaggcgtcgctgcagacccgctccttcatctcggcggcctccttc
caggagaccacccgtgtcctcaccgaagcatcggtacagggcaagaaggacaagctggtt
ggcctgaaagagaacgtcatcgtgggtcgcctgatcccggccggtaccggtggtgccacc
cagcgggtgcgcaacatcgctcagtcgcgtgacaatgtcgtccttgacgcacgccgcgag
gaggcagaagccgccgccgcactggctgccccgtcgatggatgacgtcgccaccgaggat
agcctcgacaatctggtggaaaccccagagagccgcgactga
DBGET
integrated database retrieval system
