Phaeobacter piscinae: PhaeoP14_03293
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Entry
PhaeoP14_03293 CDS
T05105
Name
(GenBank) putative tRNA-nucleotidyltransferase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ppic
Phaeobacter piscinae
Pathway
ppic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PhaeoP14_03293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppic03019
]
PhaeoP14_03293
Enzymes [BR:
ppic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
PhaeoP14_03293
Messenger RNA biogenesis [BR:
ppic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PhaeoP14_03293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
Thump_like
Motif
Other DBs
NCBI-ProteinID:
ATG41330
LinkDB
All DBs
Position
complement(3442218..3443372)
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AA seq
384 aa
AA seq
DB search
MTHIQAKWLEDPAVQHVCDVLTKGGAEVYFVGGCVRNALLGAPVSDLDLSTNVPPQRVMA
LAEGAGIKAIPTGIDHGTVTLVHRGTPYEITTFRRDVATDGRRAVVAFADRIEEDAARRD
FTMNALYARPDGGLVDPLNGLPDLRARLVRFIGSAAQRIREDYLRSLRYFRFHAWYGNPD
AGFDPDALSAIAENLDGIGSLSRERVGSEVLKLLAAPNPAPAIAVMRQIGLLPLILPGSD
DRALGPLVHLEAGRSANPLCRLAALGGDAPWEALRLSKAQAADVRLLRAAAEGTDGPAAL
AYHHGATTARNVTMLRSALFEVPVAPDLEAEITKGAAAVFPLSAKDLMPDLQGPALGAAL
KSLQKDWIKSGFMLDRDALLKRLL
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgacccatatacaggccaaatggctggaggatccagctgtgcagcacgtctgcgacgtc
ctgacaaagggcggtgcagaggtatattttgtcggcggctgtgtgcgcaatgcgctattg
ggggcaccggtttcggatcttgatctgtcaaccaatgtgccaccacagcgtgtcatggcc
cttgctgaaggggccgggatcaaggccataccaacaggcattgaccacggcaccgtgaca
ttggtccatcgcgggaccccttacgagatcaccacgtttcgccgtgatgtcgccactgat
ggccgacgcgctgttgtggcatttgccgaccggatcgaggaggacgctgcgcggcgcgat
ttcaccatgaatgcgctttatgcccgccccgacggggggctggttgacccgctgaatggc
ctaccggatctgcgcgcaagactcgtccggttcattggcagtgcggcgcagcgcattcgt
gaggattatctacgctcgctgcgctatttcaggtttcatgcctggtatggcaacccagat
gccggatttgacccggacgccctgtcggccatcgcagaaaacctggatgggattggcagc
ctctcgcgtgaacgggttggcagtgaagtgctgaagctgcttgcggcgccgaatccggcg
ccggcaattgcggtgatgcggcagattgggctgctacctctgattcttccaggaagcgat
gatcgcgccctggggccgctcgtccatctggaagcggggaggtctgccaacccgctttgc
cgcctggccgcgctgggcggagatgcgccatgggaggccttgcgcctgagtaaagcccaa
gctgcggatgtgcgtctgctgcgtgcagctgcggagggtacggatggaccggcggcactg
gcttatcatcacggcgcgaccaccgcgcgcaacgtgacgatgttgcgatctgctttgttc
gaggtaccggttgcccctgatttagaggctgaaattaccaaaggagccgcagccgtattc
ccgctttccgccaaggatttgatgccagacctgcaaggcccggcgctgggtgcagcactc
aaatccttgcagaaggactggatcaaatctgggttcatgcttgaccgcgatgcgttgctg
aaacggctgctctaa
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