Phaeobacter piscinae: PhaeoP14_03341
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Entry
PhaeoP14_03341 CDS
T05105
Symbol
addB
Name
(GenBank) double strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
ppic
Phaeobacter piscinae
Brite
KEGG Orthology (KO) [BR:
ppic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppic03400
]
PhaeoP14_03341 (addB)
Enzymes [BR:
ppic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PhaeoP14_03341 (addB)
DNA repair and recombination proteins [BR:
ppic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PhaeoP14_03341 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
VitK2_biosynth
Motif
Other DBs
NCBI-ProteinID:
ATG41378
LinkDB
All DBs
Position
complement(3488311..3491244)
Genome browser
AA seq
977 aa
AA seq
DB search
MRFEPQDTPRLFAVPCGVDFPRALVDGLVARSRNTPPEALAKVELIVNTSRMARRVRDLF
DQGPALLLPRISLLSDLDMRATLRGLPPALPPLRRRLELSQLIAKLLEAQPDLAARSSLY
DLSDSLAALFDEMQGEGVSPETIRSLDVSDMSGHWARAQQFIAIADDFAETHEHAMDAQA
RQRQVVLDLIEEWQDCPPQHPVILAGSTGSRGTTLMLMEAIARLPQGAVILPGFDDQQPG
HVWEHLDDPLMSEDHPQYRFFKIMRDLDMTPDQVRPWVDALPASTARNRLVSLALRPAPV
TDAWMREGPELRDIDQATADVTLVEAPNPRAEALTIALRLRKAAENGQTAALITPDRMLT
RQVAAALDRWDILPDDSAGQPLQLSPPGRFLRHIAELFCKPLACDTLLTLLKHPLCHDGA
GRGDHLRHTRELELRLRRYGPPFPDADSFAAFEIGRELMPGWTAWMTQCFADKPIRGTQP
LSQWVEALRNLAEAISRGSQEAAAGGLWDKKAGRKALEIMNNLQAEAGYGGEMTARDFAD
LLRALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLNEGSWPEAAAPDPWLNRQ
LRHQAGLLLPERRIGLSAHDFQQAIAAPEVWLTRSERSDEADTVPSRWLNRMTNLLSGLP
GQGGPAALTDMRTRGQEWLGWAEVLEAPISLPPAKRPAPRPPIAARPRRLTITEIPRLIR
DPYAIYAKHVLKLRPLDPLVQEPDALLRGIVLHKILEDFIKATVADPGRLTAQDFLATAA
AHLEAKVPWPIARSLWLARLERIADDFINGERQRQQTARPTGFEVSGAVRVAPLDFEIAG
TADRIDVDERGGLHLFDYKTGDPPTESQQKTFEKQLLIEAAMAERGAFERYGEGRVERAL
FLGLKSPLKEVAAPLMDEPPGKVWEELTKLISAYFEPDQGYSSRRMVFQDTQTGDYDHLA
RYGEWDRSDQPVSEILT
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgagccgcaagacacaccacgccttttcgcagttccctgcggcgtcgatttc
ccacgcgctctggtcgacgggctggttgcccgcagtcggaacacgccgccagaagcgctg
gccaaggtcgaactgatcgtcaacacctcccgcatggcacgccgggtgcgggatctgttt
gatcaggggccagctctgcttttgccgcggatctcgctgctgagtgatctcgacatgcgc
gccaccttacggggtctgccgccagccctgccgccgttacggcgacggctggagctctca
cagctgattgccaaattactggaagcacagccagatctggccgcccgatcctccctctat
gatctctcagatagtctcgcagcattgtttgatgaaatgcagggcgaaggcgtcagcccg
gagacgatccgctcgctggatgtctccgacatgtccggccattgggcgcgcgcgcagcag
ttcatcgccatcgccgacgactttgccgagacccacgaacacgcaatggatgcacaggcc
cgtcagcgacaggttgtgcttgatctgatcgaagagtggcaggactgcccaccgcaacac
ccggtcatcctggccggctccaccggatcgcgtggcaccacactgatgctgatggaggca
attgcgcgcctgccgcaaggcgcggtgatcctacccggtttcgatgaccagcagccgggc
cacgtctgggaacatctagatgatccgctgatgtcagaagaccacccgcaatatcggttt
ttcaagatcatgcgcgatctagacatgaccccggatcaggtgcgtccatgggtcgatgca
ctaccagcctccacggcgcgcaatcggctggtctctctggcgctgcgcccggcgcctgtt
accgatgcctggatgcgcgaagggccggagctgcgcgatatcgatcaggccaccgccgat
gtaaccttggtcgaggcacccaatccccgcgccgaggcgctgaccattgccctgcgactg
cgcaaggccgccgagaatggacagacagccgcgctgatcacaccggatcgtatgctgacc
cgacaggtggcggccgcgctggatcgctgggatattctgccggacgattccgctggccaa
ccactacaactgtcacctccgggccggtttctgcgccacatcgcggaactgttctgcaag
ccgctggcctgcgatacgctgttgacgctgctgaaacatccgctttgtcatgatggggca
gggcgcggtgatcacctgcgccacacccgcgaattagagctgcggctgcgccgctacggc
cccccttttccggatgccgacagttttgccgcgtttgaaatcgggcgggagctgatgcct
gggtggaccgcctggatgacgcagtgttttgccgacaaacccatccgtggaacgcagccc
ctgtcacaatgggttgaagccctcaggaatctcgccgaggcaatcagccgtggcagtcag
gaggctgctgccggtggcctctgggacaagaaggctgggcgcaaagcgctggaaatcatg
aacaaccttcaggcggaggctggctatggcggtgagatgaccgcccgcgattttgccgat
cttctgcgcgcgctgctgtcgcagggggaggtgcgggaccgcgatgcgccctatggctcc
atcctgatctggggaacgcttgaggcgcgcgtgcagggggctgatctggtgatccttggc
ggcctaaacgaaggcagctggccggaagctgctgcacccgatccatggctcaaccgacaa
ctgcgtcatcaggcggggctgttgctgccggaacgtcgcattgggctgtcggcgcatgat
ttccaacaagccatcgctgcacccgaagtctggttgactcgctccgaacggtcggatgaa
gcggatacagttccgtcacgctggctcaaccgaatgaccaaccttctgtccggcttgccg
gggcagggcggccctgcagcgctgacggatatgcggacccgtggtcaggaatggttgggc
tgggcggaggtgttggaggcgcctatctctctgccccccgcaaaacgaccggcaccacgc
ccccccatcgccgcgcgcccccgacgcctgacgattacggaaatcccgcgtctgatccgc
gatccttatgcgatttacgccaaacatgtgttgaagctacgtccgcttgatcctctggtg
caggaacccgacgccttgctgcgcggcatcgtgctccacaagatcctggaggactttatc
aaggcaaccgtcgctgaccccggtagactgacagcacaggatttccttgcgacagcggca
gcccatctggaggcaaaggttccatggcccatagcgcgcagcctctggctggcccggctt
gaacgcattgcagatgacttcatcaatggagaacgccaacggcagcaaaccgcacgcccg
actggttttgaagtctccggtgccgtgcgcgttgcgccgcttgattttgagattgcaggc
actgccgatcgaattgatgtggatgaacgcggcggcctgcatttatttgactacaaaacc
ggcgatccgccaactgaaagccaacagaaaacctttgaaaaacaactgctgatcgaggcc
gccatggccgaacgcggtgcgtttgagcgctatggcgagggcagggtggaacgggcgctg
ttccttggcctaaaaagcccgctgaaagaggtcgcagccccgctcatggatgagccaccg
ggtaaggtttgggaagaattgaccaagctgatttcagcctatttcgagccggatcaaggg
tatagcagccgtcgcatggtgtttcaggacacccagacgggcgattacgatcatctggca
cgctacggagaatgggaccgaagcgatcaaccggtatcggagattttgacatga
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