Phaeobacter piscinae: PhaeoP14_03514
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Entry
PhaeoP14_03514 CDS
T05105
Name
(GenBank) DNA topoisomerase 1B-like protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppic
Phaeobacter piscinae
Brite
KEGG Orthology (KO) [BR:
ppic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppic03032
]
PhaeoP14_03514
03400 DNA repair and recombination proteins [BR:
ppic03400
]
PhaeoP14_03514
Enzymes [BR:
ppic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PhaeoP14_03514
DNA replication proteins [BR:
ppic03032
]
Prokaryotic type
DNA Topoisomerases
PhaeoP14_03514
DNA repair and recombination proteins [BR:
ppic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PhaeoP14_03514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Top1B_N_bact
Topoisom_I
THDPS_N_2
Motif
Other DBs
NCBI-ProteinID:
ATG41547
LinkDB
All DBs
Position
pP14_a:complement(62325..63302)
Genome browser
AA seq
325 aa
AA seq
DB search
MKLVYYTDDQPGVTRRRRGRGFSYYMPDGSHIGDAAERARLNGLGVPPAYTDVWLCPLSN
GHLQATGRDARDRKQYRYHPEWQAHRAEQKFAQLGIFGERLPVLRRWISDRLTGPVGDEE
TAIAAVLALLDRGSLRIGNPSYTEENGSYGATTLRPRHVAFSGQVIQLRYTAKGGQTVEK
SLRGPALQRILERSQDLAGPELISWVDADGNARAVRSEQVQEVLAELCGDGVSAKTLRTW
NGSHAAFTVALDAPTLTITAMAEAAAERLHNTPTIARNSYIHPQIIALAELPDPQRAARL
SALPQRQISGLRLGEDRLIDFLNAG
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgaaactggtctactacacggatgatcagcccggtgttacccgccgccgtcgaggccgc
gggttttcctactacatgcccgatggcagtcatatcggcgatgcggcggaacgggcgcga
ctgaatggtttgggcgtcccgcctgcctacacagatgtctggttgtgcccactatccaat
ggccatcttcaagccaccgggcgcgacgcccgcgatcggaagcaatatcgctatcaccct
gagtggcaggcgcaccgcgccgaacagaaatttgcccagctcggcatctttggggagcgc
ctacccgtgttgcgccgctggatcagcgacaggttgaccggccctgttggagacgaagaa
accgcgatcgccgccgtactcgccctgttggatcgcggctcgctcagaattggaaatccc
agctacaccgaggagaacggcagctacggcgccaccacattgcgcccgcgtcacgtcgcc
ttttcggggcaggtgatacagctgagatatacggcgaagggtggccagaccgtggagaaa
tccctacgtggccctgcgttgcaacgcattcttgaacgctcacaggatctggccggtccc
gaactgatctcttgggtcgacgccgacggcaatgcccgcgccgtgcggtcagagcaggtg
caggaagttttggctgagctctgcggcgatggggtctccgccaagaccctgcgcacctgg
aacggcagccacgccgcatttaccgtcgctctcgatgccccaaccctgaccatcaccgcg
atggccgaagccgctgcagagcggctacacaacaccccaaccatcgcccgcaacagctat
atccatccgcagatcatcgcattggccgagctaccagaccctcaacgtgcagcacggctg
agcgctttgccacagcgccaaatcagcgggctacgcttgggggaggatagactaattgat
ttcctcaatgccggttga
DBGET
integrated database retrieval system
