KEGG   Pseudomonas piscis: QL104_00435
Entry
QL104_00435       CDS       T09652                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
ppii  Pseudomonas piscis
Pathway
ppii03030  DNA replication
ppii03410  Base excision repair
ppii03420  Nucleotide excision repair
ppii03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppii00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    QL104_00435 (polA)
   03410 Base excision repair
    QL104_00435 (polA)
   03420 Nucleotide excision repair
    QL104_00435 (polA)
   03440 Homologous recombination
    QL104_00435 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppii03032]
    QL104_00435 (polA)
   03400 DNA repair and recombination proteins [BR:ppii03400]
    QL104_00435 (polA)
Enzymes [BR:ppii01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     QL104_00435 (polA)
DNA replication proteins [BR:ppii03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     QL104_00435 (polA)
DNA repair and recombination proteins [BR:ppii03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     QL104_00435 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     QL104_00435 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: WMN17910
LinkDB
Position
80784..83570
AA seq 928 aa
MSQAPLILVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPQSPFAVVFD
AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVEGVEADDVIGTLAR
SSAAASRPVVISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKVDVPLEVGLDDLHLREPDREKLAELYSLMEFKSWLDELQRDAKRVELDL
AAAPVAAEQPAAEQAPLELQYETILEQARFDAWLHKLKGAKLIAFDTETTGIDAQQAQLV
GLSFAVQAGEAAYVPLAHSYLDVPQQLDRDAVLLALKPLLEDPKLLKVGQHAKFDMNILA
NCAIGGDPANGISMRGVAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQDIAGKGA
KQLTFDQIPLEQAGPYAAEDADVTLRLHQALFEKLSAIPSLASVLTDIEMPLVPVLARIE
RQGALVDDKLLGVQSIELGDKMVALEREAFAIAGEEFNLGSPKQLGSILYDKLGLPVLKK
TAKGQPSTAEEVLAKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH
QAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPAGYKLLAADYSQIELRIMAHLSQD
EGLLNAFRNNQDVHTATAAEVFKVELGEVTSEQRRSAKAINFGLIYGMGAQKLGKDIGVE
TKQAKAYIDTYFARYPGVREYMDRTRAQAADQGYVETIFGRRLYLPEINSNKPQERAGAE
RTAINAPMQGTAADIIKKAMVAVDNWLQASGLDARVILQVHDELVLEVREDLVDQVREEI
RGYMSGAATLDVPLLVEVGVGNNWDEAH
NT seq 2787 nt   +upstreamnt  +downstreamnt
atgagccaagcccccctcatcctggtggacggttcgtcctacctgtaccgcgcctttcat
gcgctgccgccgctgaccacctccaaaggcatgccgaccggcgcggtcaagggcgtgctg
aacatgctcaagagcttgcgcaaacagtatccgcaaagccccttcgccgtggtgttcgac
gccaagggcggaaccttccgcgatgaaatgtacgccgagtacaaggccaaccgtccgagc
atgccggacgacatgcgggtacagatcgaacccctgcacgccagcgtgatcgccctgggc
ttcccgctgctgtgcgtcgagggcgtggaggccgacgatgtgatcggcaccctggcccgc
agcagcgcggcggcgtcccggccggtggtcatctccaccggcgacaaggacatggcgcag
ctggtggatgggcacattaccctggtcaacaccatgtccggtagcagcatggacgtggag
ggcgtgaaggagaaattcggtgtcgctcccgagcagatcatcgattacctggcgctgatg
ggcgactcctccgacaacattccgggcgtcccgggcatcggtccgaagaccgcctcgggc
ttgctggtgggggtcaacggcggcctcaaggagctctacgagcaactcgatatcgtgcct
accctgccgattcgcggggccaagaccttgccggccaagcttgaagagcacaaggaaatg
gcgttcctttcctaccagctggccaccatcaaggtcgacgtaccgctggaggtggggctg
gatgacctgcacctgcgcgagccggaccgcgagaagctggcagagctctacagcctgatg
gagttcaagagctggctcgacgagctgcagcgtgatgccaagcgtgtcgaactcgatttg
gctgcggctccggtcgctgctgagcaacccgcggccgagcaggcgccgctggaattgcag
tacgaaaccatcctcgagcaggcgcgtttcgatgcctggctgcacaagctcaagggcgcc
aagctgatcgccttcgacaccgagaccaccggcatcgatgcacagcaggcgcaactggtg
ggcctgtccttcgcggtccaggcgggcgaggcggcctatgtccccctggcccatagctac
ctcgatgtaccgcagcagctggatcgcgacgcggtgctgctggccctgaagccgttgctg
gaagacccgaagctgctcaaggtgggccagcacgccaagttcgacatgaacatcctggcc
aactgtgccatcggtggcgacccggccaatggcatcagcatgcgcggcgtggccttcgat
accatgctcgagtcctatgtgctcaattccaccgccacccgccatgacatggacagcctg
gcgcagaagtacctggatcacaccacggtgagtttccaggacattgccggcaagggcgcc
aagcagctgacgttcgaccagatcccgctggagcaggccggcccctacgccgccgaagac
gccgacgtgaccctgcgcctgcatcaggccctgttcgagaaactcagcgccattccgagc
ctggccagcgtgctgaccgatatcgagatgccgctggtgccggtgttggcgcgcatcgaa
cgccagggcgcgctggtggatgacaagctgctgggcgtgcagagcatcgagctgggcgac
aagatggtggccctggagcgtgaggccttcgcgattgccggcgaggagttcaacctgggc
tcgcccaagcagttgggcagcatcctctatgacaagctgggcctgccggtgctgaagaag
accgccaagggccagccatccaccgccgaagaggtcctggccaagctggccgaggacgat
tacccgctaccccgggtgctgatgcagtaccgctccatgagcaagctcaagagcacctac
accgaccgcctgccggagcagatcaacccgcgtaccgggcggatccacacctcctatcac
caggcggtggcttccaccgggcgcctgtcgtccagcgatccgaacctgcagaacatcccg
gtgcgcaccgccgagggccggcgtatccgccaggccttcatcgctccggccgggtacaag
ctgctggcggcggactactcgcagatcgagctgcggatcatggcccacctgtcccaggac
gaaggcctgctcaacgcttttcgcaacaaccaggacgtacacaccgccacggccgcggaa
gtgttcaaggtcgaactcggggaagttacttccgagcagcgccgcagtgccaaggccatc
aacttcggcctgatctacggcatgggcgcgcaaaagctgggcaaggacatcggcgtcgag
accaagcaagccaaggcctatatcgacacctacttcgcccgctatccgggggtgcgcgag
tacatggaccgcactcgcgcccaggcggccgaccagggctacgtggagaccatcttcggc
cgtcgcctgtacctgccggagatcaattccaacaagccccaggagcgggcgggcgccgag
cgcaccgcgatcaacgcgccgatgcaaggcaccgccgcggacatcatcaagaaggccatg
gtggcggtggacaattggctgcaggcctctggcctggatgccagggtcatcctccaggtg
cacgacgaactggtcctggaagtccgcgaggacctggtggaccaggtgcgtgaggaaatt
cgcggttacatgagtggcgccgcgaccctggatgtaccgctattggtagaggtcggggtg
ggaaataactgggatgaggcccattaa

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