Pseudomonas piscis: QL104_03680
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Entry
QL104_03680 CDS
T09652
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QL104_03680 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppii03400
]
QL104_03680 (recD)
Enzymes [BR:
ppii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QL104_03680 (recD)
DNA repair and recombination proteins [BR:
ppii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QL104_03680 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
SH3_13
Viral_helicase1
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_28
AAA_16
AAA_5
NTPase_1
TraI_hel_assoc_N
AAA_25
nSTAND3
T2SSE
PhoH
DEAD
Motif
Other DBs
NCBI-ProteinID:
WMN18521
UniProt:
A0ABY9NJC0
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All DBs
Position
819096..821165
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AA seq
689 aa
AA seq
DB search
MTPDLFGTLDEPVPQAPDLAPLSHCADLLLLLDRWVARGWLRALDRAFVGFLHELDPDCD
PLVLMAAALTSHQLGHGHVCLDLFETLKEPDFALSLPPEGDVQGGAPVLPSQVLASLEGA
HWCKVLAGSRLVALAADHGEAARQRPLVLSGKRLYLRRYWAYERRIDQALRQRLAQTEAA
PEHLARRLDDLFGAARPSGPVDWQKLACALATRGAFSIITGGPGTGKTTTVVRLLALLQG
PAVEARKPLRIRLAAPTGKAAARLTESISLQVRSLSVADEVREKIPSDVTTVHRLLGNRP
GTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDALPAHARLVLLGDKDQLASVEAGA
VLGDLCRDAEAGWYDPRTRAWLETVSGEDLSTSGLQEDTGHQHPLAQQVVMLRHSRRFGE
GSGIGQLARWVNQQQADEARRLLAARSHADLYCLGLKGEQDRALERLLLEGHGEGPQGYR
HYLNVLRSQRPAADTAVDDRLWTDWARHVLQAFDRFQLLCAVRKGPWGVENLNLRVTQAL
FKARLIDSDQQWYEGRPVLMTRNDYGLGLMNGDIGIALHLPEQGGRQVLRVAFPRNDGQG
GVRLVLPSRLNDIETVYAMTVHKSQGSEFTHTALILPDALNPVLTKELIYTGITRAKDWF
SLIEPRAGVFEEAVRRKVKRLSGLMLELD
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgaccccggacctgtttggcaccctggacgagccggttccccaagccccggacctggcg
ccgctgagccattgtgccgacctgttgctgttgctcgatcgttgggtcgcccgtggctgg
ctgcgggccctggacagggccttcgtcggtttcctccatgaactggatccggactgcgac
ccgctggtgcttatggccgcggccctgaccagccatcaattgggacatgggcacgtttgc
ctggatctgttcgagacactcaaggagccggatttcgccctgtcgctgccacccgagggc
gatgtgcagggcggcgccccggtgttgccgtcccaggtcctggccagcctcgaaggcgcc
cactggtgcaaggtgctggccggcagccggctggtggccctggcggcggatcatggcgag
gccgcccggcaacggccgttggtgctgtcgggcaagcgcctgtacctgaggcgctactgg
gcctacgagcggcgcatcgaccaggccttgcgccagcgcctggcccagaccgaggcggcc
ccggaacacctggcccggcgcctcgacgacttgttcggcgcggcccggccatccggtccc
gtcgactggcagaagctcgcctgcgccctggccacccggggtgcgttcagcatcatcacc
ggcggcccgggcaccggcaagaccaccaccgtggtgcgcctgctggccttgctccagggg
ccggcggtggaggcgcgcaagccgctgcgcatccgcctggcggcgcccactggcaaggcg
gcggcgcgtctgaccgagtccatcagcctgcaggttcgctcgctgtcggtggccgatgaa
gtgcgggaaaagatccccagcgacgtcaccaccgtgcaccgtctgctgggcaatcgaccc
ggcacccggcacttccgccatcacgccggcaatcgcctgccgctggatgtactggtggtg
gatgaagcctcgatgatcgacctggaaatgatggccaacctgctggacgccttgccggcc
catgcccgcctggtgctgctgggggacaaggaccagttggcctcggtggaggccggggcg
gtgctgggcgacctgtgccgcgatgccgaggccggttggtatgaccctcggacccgggcc
tggctggaaacggtcagcggtgaagacctctccaccagcggcttgcaggaagacaccggg
caccagcatccgctggcccagcaagtggtgatgctgcgtcactcccggcgcttcggcgaa
ggcagcggcatcggccagctggcgcgctgggtcaaccagcagcaagccgacgaagcccgt
cgcctgctggcggcgcgcagtcatgccgacctgtactgcctgggtctcaagggcgaacag
gatcgggccctggagcggctgttgctggaaggtcacggcgaagggccgcaaggttatcgt
cactacctgaatgtcctgcgcagccagcgtcccgccgccgacactgctgtcgacgaccgg
ctctggaccgactgggcacgtcatgtcttgcaggccttcgaccgcttccagctgctgtgc
gcggtgcgcaaggggccttggggcgtggagaacctcaacctgcgcgtgacccaggccttg
ttcaaggcgcggctgatcgacagcgaccagcagtggtacgagggccggccagtgctgatg
acccgcaacgactacggcctgggcctgatgaacggcgatatcggcatcgccctgcacctg
ccggagcaaggggggcgccaggtgctgcgcgtggccttcccgcgcaacgacggccagggc
ggagtgcgcctggtactacccagccgtctgaatgatatcgagacggtctatgccatgacg
gtgcacaagtcccagggctcggagttcacccacactgcgttgatcctgcccgatgcgttg
aatccggtgctgaccaaggagctgatctacaccggcatcacccgcgccaaggactggttc
agcctgatcgagccccgtgccggagtgttcgaggaggcagtgcggcgcaaggtcaagcgc
ttgagcgggctgatgctggagctggactga
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