Pseudomonas piscis: QL104_05920
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Entry
QL104_05920 CDS
T09652
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03030
DNA replication
ppii03430
Mismatch repair
ppii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QL104_05920 (dnaE)
03430 Mismatch repair
QL104_05920 (dnaE)
03440 Homologous recombination
QL104_05920 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppii03032
]
QL104_05920 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppii03400
]
QL104_05920 (dnaE)
Enzymes [BR:
ppii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QL104_05920 (dnaE)
DNA replication proteins [BR:
ppii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QL104_05920 (dnaE)
DNA repair and recombination proteins [BR:
ppii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QL104_05920 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WMN18943
UniProt:
A0ABY9NMN5
LinkDB
All DBs
Position
1306999..1310526
Genome browser
AA seq
1175 aa
AA seq
DB search
MPASFVHLRLHTEFSLVDGLVRIKPLVKALTGMGMPAVAVTDQSNMCSLVKFYKTSMGAG
IKPICGADLWLANKDDADGPLSRISLLAMNAVGYRNLTELISRGFTEGQRNGLTIIERDW
VVQAAEGLIMLSAAKEGEIGMALVAGDLALAEALALEWMGVFPDRFYLEVQRTNRPNDEE
QLHGAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRALDDPRRSKNYSDQQYL
KSAQEMAELFSDLPEALENTVEIAKRCNITVQLGKYFLPDFPTPNGMGIDDYLRHVSHEG
LEERLAVLWPKDTTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVP
VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY
VAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQ
EEMLRDFLKTDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGL
VTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPDVNIDFIPLDDKKTY
ELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHG
RAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKP
EEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTH
YPAPFMAAVLSADMHNTDKVVVLIEEVRSMKLRLDAPDVNSSDFKFTVNDDGRIVYGLGA
IKGVGEGPVEAIVEARAEGGPFKDLFDFCSRVDLKRINKRTLDALIRSGALDRLGPYFHD
ELKAYQANIDRNRAVLLSALEEAIKAAEQTARTADSGHADLFGGLFVEEHADVYGNHRKA
RELTLKERLRGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALR
VMKNKKGDKMGFITLDDRSGRIEASLFADSFMAAQALLQTDAMVVVEGEVSNDDFSGGLR
LRVKRVMSMEDARTNLAESLRLKVHSDALKGDQLRWLGDLLKRHRGACPISMEYSRDDAK
TLLQFGEAWRIDPADSLIQALRDQFGKDNVFLQYR
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaattttccctggtcgacggtctg
gtgcggatcaaaccgctggtcaaggccctgaccggcatgggcatgccggcggtagcggtt
accgaccagagcaacatgtgctccctggtcaagttctacaagaccagcatgggcgccggg
atcaagccgatctgcggtgccgacctgtggctggcgaacaaggacgatgcggacggcccc
ctgagtcgcatcagcctgctggcgatgaatgccgtgggctatcgcaacctcaccgagctg
atctcccgtggctttaccgaaggccagcgcaacgggctgaccatcatcgaacgcgattgg
gtggtgcaggctgccgaaggcctgatcatgctctcggcggccaaggagggggagatcggc
atggccctggtggcgggcgatcttgcgctggccgaggccctggccctggaatggatggga
gtgttcccggatcgcttctacctggaagtccagcgtaccaatcgtcccaacgacgaagag
caactgcatggtgccgtggccctggccgacaagatcggcgcgccgttggtggcgaccaac
gatgtgcgcttcatcaagcaggacgatttcgaggcccacgagactcgggtttgcatcggc
gaaggccgcgccctggacgatccgcgccgctcgaagaactacagcgaccagcagtacctc
aagagtgcccaggagatggccgagctgttcagcgacctgcccgaggcgctggaaaacacc
gtggagattgccaagcgctgcaatatcacggtgcagttgggcaagtacttcctccctgac
ttcccgacgcccaacggcatgggtatcgatgattacctgcgccatgtgtcccatgagggg
ctggaggagcgcctagcggtgctctggcccaaggacaccacgcccaactatgaagagaag
cgccaggtctacctggatcgcctgaagttcgagctggatatcatcatccagatgggcttc
cccggttacttcctgatcgttatggacttcatcaagtgggccaagaacaacggcgtcccc
gtcggtccgggccgggggtcgggtgccggttccctggtggcctatgtgctgaagatcacc
gacctcgatccgctggcctatgacctgctgttcgaacgtttcctcaaccccgaacgtatt
tccatgcccgacttcgacgtcgacttctgcatggacggtcgtgaccgggtgatcgactac
gtggccgaggcctacgggcgtaacgcggtaagccagatcatcaccttcggcaccatggcc
gccaaggcggtggtgcgcgacgtggcgcgggtgcaaggcaagtcctacggcctggccgac
cgcctgtcgaagatgatccccttcgaggtcggcatgaccctggagaaggcctacgagcag
gaggagatgctgcgcgacttcctcaagaccgatgaggatggccgcgaaatctgggacatg
gccttgaagctcgaaggggtcacccgcggcactggcaagcacgccggtggcgtggtgatc
gcgccgaccaagctcaccgacttctcgccgatcgcctgtgacgaagagggcggcggcctg
gtgacccagttcgacaaggacgatgtcgaggcggcgggcctggtgaagttcgacttcctg
ggcctgcggaccctgaccatcatcaagtgggcgatggagaccatcaaccgcgagcaggcc
aagaacaacctgcccgacgtcaacatcgacttcatcccgctggatgacaagaaaacctac
gagctgttgcagaaggccgagaccacggccgtgttccagctcgaatcccgcggcatgaag
gagctgatcaagaagctcaagcccgactgcctggaagacctcatcgcactggtggcgctg
ttccgcccgggcccgctgcaatcgggcatggtggacgacttcatcaaccgcaagcacggc
cgtgccgagctggcgtatccgcactcggactatcagtacgaaggcctcaagcctgtgctg
gcgccgacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtcatg
gccggctacaccctgggtggtgcggacatgctgcgccgggccatgggtaagaagaaaccc
gaggagatggccaagcagcgcggtggtttcatcgagggttgcgttgccaacaacatcgac
gccgacctggccggtaacattttcgacctggtggagaagttcgccggctacggcttcaac
aaatcccactcggcggcctatggcctggtttcctaccagaccgcctggctcaagactcac
taccccgcgccgttcatggccgcggtactgtcggcggatatgcacaacaccgacaaggta
gttgtgctgatcgaggaagtgcgcagcatgaagctgcgcctcgatgcgccggatgtgaac
agctccgacttcaagttcacggtcaacgacgatggccgcatcgtctatggcctgggggcg
atcaagggcgtgggcgaaggcccggtggaggcgattgtcgaggcgcgggccgaaggcggc
ccgttcaaggacctgttcgacttctgcagccgggtcgacctcaagcgcatcaacaagcgc
accctggatgcgctgatccgcagtggcgccctggaccgcctggggccttacttccatgac
gagctcaaggcctaccaggccaatatcgaccgcaaccgcgccgtattgctgtcggccctg
gaagaggcgatcaaggcggccgaacagaccgcccggaccgccgatagcggccacgccgac
ctgttcggcgggttgttcgtcgaggagcatgcggacgtctatggcaaccaccgcaaggct
cgtgaactgacgctcaaggaacgcctgcggggcgagaaggacaccctcggcctgtacctg
accggccaccccatcgatgagtacgagggcgagattcgtcgtttcgcccgccagcgcatc
atcgatctgaagccggcgcgcgacacccagaccgtggccgggatgatcattgccctgcgg
gtgatgaagaacaagaagggcgacaagatgggtttcatcaccctcgacgaccgttccggg
cggatcgaggcctcgttgttcgccgactctttcatggctgcccaggccctgctgcagacc
gacgccatggtggtggtggagggcgaggtcagcaacgatgacttctccggcggcctgcgc
ctgcgggtcaagcgagtgatgagcatggaggatgcgcggaccaacctggccgaaagcctg
cgcttgaaagtccacagcgatgcgctcaagggcgatcagctacgctggctgggcgatctg
ctcaagcgccaccgcggcgcgtgcccgatttccatggagtacagtcgcgacgatgccaag
accctgctgcagttcggcgaggcctggcgcatcgatccggcggacagcttgattcaggcc
ctgcgtgaccagttcggcaaagacaacgtcttcctgcaataccgttga
DBGET
integrated database retrieval system
