Pseudomonas piscis: QL104_07850
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Entry
QL104_07850 CDS
T09652
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppii
Pseudomonas piscis
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppii03016
]
QL104_07850 (rnd)
Enzymes [BR:
ppii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
QL104_07850 (rnd)
Transfer RNA biogenesis [BR:
ppii03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
QL104_07850 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
WMN19309
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All DBs
Position
1662813..1663946
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGQLCAEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGQRAYLIDPL
TIDNWQPLAELLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAQVFSQLRPKLSEDKYRWV
LEDGAELVANLRREVDPNEVYRDAKLAWKLSRAQLAVLRELCAWREREARARDLPRNRIV
REHALWPLARTQPDTLSALAKIEDMHPRTVRQDGEFLLDLIKRSAKLGPEHWPPALPEPL
PIEASALLKRLKAVGQAEAERLGIAPELMLRKKTLESLLKSGFPSGPYQLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggtcagctttgcgccgaa
tggcagcaattgcccttcgtcgccctcgacaccgaattcatgcgggtcgacactttctac
cccatcgccggcctgttgcaggtaggcgatgggcagcgcgcctatctgattgaccctttg
accatcgacaactggcaacccctggccgaattgctggagaacccggcggtggtcaaggtg
gtgcatgcctgcagcgaggacctggaagtcctgttgcgcctgaccggcagcctgcccgcg
ccgttgttcgatacgcaactggcggccgcctacctgaacctggggttctccatgggctac
tcgcgcctggtgcaggaagtcctgggcatcgaattgcccaagggcgagacccgctccgat
tggctgcagcgcccgctgtcggaaacccaggtcagctacgccgccgaggatgccgtacac
ctggcccaggtgttcagccaactgcgtccgaagctgtccgaggacaagtatcgctgggtg
ctcgaggacggcgccgaactggtggccaacctgcgccgcgaagtggaccccaacgaggtt
taccgtgatgccaagctggcctggaagctgtcccgcgctcagttggcggtactgcgcgag
ctgtgtgcctggcgcgagcgggaagcccgcgcccgtgacctgccacgcaaccgtatcgtg
cgtgagcatgcgctctggcccctggccaggacccagcccgataccctgtcggcgctggcc
aagatcgaagacatgcatccgcgcaccgtgcgccaggatggcgagttccttctcgacctg
atcaagcgcagcgccaagctgggcccggagcactggccgccggccctgcccgagccattg
ccgatcgaagcctcggccctgctcaagcgcctcaaggccgtgggccaggccgaagccgag
cgcctgggcatcgccccggagctgatgctgcgcaagaaaaccctggagagcctgctcaag
agcggcttccccagcggaccctaccaattgcccgattcgctgcgtggctggcgccgcgaa
ttgatgggccaggcgctgctggatagcctggccaccgccggagaacagccttga
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