Pseudomonas piscis: QL104_08020
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Entry
QL104_08020 CDS
T09652
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppii
Pseudomonas piscis
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppii03019
]
QL104_08020 (hrpA)
Enzymes [BR:
ppii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QL104_08020 (hrpA)
Messenger RNA biogenesis [BR:
ppii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QL104_08020 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
nSTAND3
AAA_25
AAA_22
T2SSE
NACHT
ABC_tran
ResIII
Motif
Other DBs
NCBI-ProteinID:
WMN19343
LinkDB
All DBs
Position
1696454..1700365
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQSPAIDQLLKNLDQAMLADRHRLRRQLLELRKKPDEAKLAQWLERMQASCNLVTARR
DSVPTIRYDDSLPIAAKRDEIKDALQKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLVKLMTDGILLAETQND
RFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLARFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEDGNRVEDDLTVDQAILATLDEIAAHERSERRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAARLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAALVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDAH
RQLSLICRDLQLSLNKEPADYQKLHKAVLVGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLVKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLTANTQLLEQLDAL
EAKARRRDILADEETLFAFYDARLPEQIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ASEVTARQYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPAERLEWLVPGLI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRMDFADGSLPQALGRELLRMTGARVSDEA
WSESAQQVESHLRMNLEIVDAQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAQKTQQKIAGLSMTVYPALVEEAGTVKEGRFSTAAEAEFQHRRALQRLLLQQL
AEPAKFLRGKLPGLTELGLLYRELGRIEALVEDILLASLDSCILDGEASLPRDGAGLASL
AERKRGAWTEHAERLARLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGF
VRETPALWFKELPRYLKAVELRFDKLGSQVQKDRVWSTELAGLWAQYQARAQKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWSQVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccaatcgcctgctatcgaccaactactgaaaaacctcgatcaagccatgctc
gccgaccgccaccggttgcgtcggcagctgctcgaactgcgcaagaagcccgacgaggcc
aagctcgcccagtggctggagcggatgcaggcttcgtgcaacctggtgacggcgcggcgc
gacagcgtgcccactatccgctacgacgacagcctgccgatcgccgccaagcgcgacgag
atcaaggacgcgctgcaaaagcaccaggtgctgatcatcgccggcgagaccggttcgggc
aaaaccacccagttgcccaagatctgcctggagatcggccgcggccagcatggcctgatc
ggtcatacccagccccggcggatcgccgcccgcagcgttgccagccgggtcgccgaagaa
ctggccacgcccctgggggcgctggtgggttaccaggtgcgcttcgaagaccagagcgat
gccaacaccctggtcaagctgatgaccgacggcatcctgctggcggaaacccagaacgac
cgcttcctcgagcgctacgacaccatcatcgtcgacgaggcccacgagcgcagcctgaac
atcgacttcctcctgggctacctcaagaccctgctgccacggcgccctgacctcaaggtg
atcatcacctcggccaccatcgaccttgcgcgcttctccaagcacttcgacgatgcgccg
atcgtcgaggtctccggtcgtaccttcccggtggaaacctggtaccggcccttgaccctg
gagcaggacgaggatggcaaccgcgtcgaggacgacctgacggtggaccaggcgatcctc
gccaccctggacgagatcgccgcccatgagcgcagcgagcgccgcagccccggcgatgtg
ctggtattcctgccgggcgagcgggaaatccgcgatgccgcggaaatgctgcgcaaggcc
cagctcaagcacaccgagatcctgcccttgtacgcgcggctgtcgccggccgaacagcag
cgcatcttccagtcccacccgggacggcgggtggtgctggcgaccaacgtcgccgagacc
tcgctgacggtgcctggcattcgctacgtgatcgacagcggtaccgcgcgcatcagtcgc
tacagctaccgggccaaggtccagcgcctgcccatcgaggccgtttcccaggccagcgcc
aaccagcgcaagggccgttgcggccgggtcgagccggggatctgcgtgcgcctgtacagc
gaagaggatttcctaggccggccggaattcaccgatccggagatcctgcggaccaacctg
gcggcggtgatcttgcagatgctccacctgcgcctgggtgaaatcaccgcattccccttc
atcgagccgccggacggcaaggccatcagcgacggcttcaacctgctgcaagaactctcg
gcggtggatcgcaacagccagctgacgcccctgggccggcaactggcgcgtttgccggtg
gacccgcgcatgggccgcatgctgctggaggcggcgcgcctgggcagtctccaggaagtg
ctgatcgtcgccagtgcgatgtcgatccaggatccgcgcgagcgcccaccggagcgccag
caggcggcggaccaggcccatgcccagtggaaggacgccgactcggacttcgccgcactg
gtcaacctgtggcgtggtttcgaagaacagcgccaggccctgacggccagcccgctgcgc
aactggtgccgcaagaatttcctcaactacctgcgcctgcgcgagtggcgcgacgcccat
cgccagttgagcctgatctgccgtgacttgcagttgagcctgaacaaggaaccggcggac
taccagaaactgcacaaggcggtgctggtgggcctgctgagccagatcggccagaagacc
gaggatggcgactacctgggcgcccgccagcggcgcttctggatccacccgtcctcgggc
ctgggcaagaaacgcccgcagtggctgatgaccgccgagctggtggagaccaccaagctc
tatgcgcgcatggtggccaagatcgagccggactggatcgaacccctggccgggcacctg
gtgaagaagaaccacttcgaaccccattgggaaaagaagcgcggccaagtggtggcctac
gaacagatcaccctgttcggcctgatcgtggtcggccgccggccagtgcactacggcccg
gtggacccggtggtatcccgcgagctgttcatccgcgaggccctggtgcggggcgagatc
cagtccaaggccaagtgcctgacggccaatacccagttgctggagcagctcgatgccctg
gaggccaaggcccggcgccgggacatcctggcggatgaggaaaccctgttcgctttctac
gacgcacgcttgccggaacagatccaccagaccgccaccttcgacagctggtaccgggtc
aacagccagaaagacccgcaactgctgatcatgcgcgaggaagacgtgctggcccgcgag
gccagcgaagtcaccgccaggcagtacccggacaccctgcatatcggcgacctggagctg
gccctgagttatcacttcgagcccaaccatccccgcgatggcgtgaccctgcgggtgccg
gcgccgctgctgccggcgttgcctgccgagcgcctggaatggctggtgccgggcctgatc
gaggccaagtgcatcgccctggtacgcaacctgcccaaggccctgcgcaagaacttcgtg
ccggtgccggacttcgtcaaggcggccttgcagcgcatggactttgccgacggctcgctg
ccccaggccctggggcgcgagttgctgcgcatgaccggcgcgcgggtcagcgacgaagcc
tggagcgaatccgcgcagcaggtggaaagccacttgcggatgaacctggaaatcgtcgat
gcccagggcaagttcctcggcgaaggccgggacctggccgaactcaccgcgcgcttcgcc
gaggccagccaggctgccctggcggtgccgcagaccgccaagagccagcagccggtggaa
gccaaggtgttcgccgcggtggcgcagaagacccagcagaagatcgccgggttgtcgatg
acggtctatccggccctggtggaagaagccgggacggtcaaggaagggcgcttctccacc
gccgccgaggccgagttccagcatcgccgggccttgcagcgcttgctgttgcaacagttg
gccgagccggccaagttcctgcgcggcaagctgccggggctcaccgaactgggcctgttg
taccgcgagctgggacggatcgaggccctggtggaagacatcctcctggccagcctcgac
agctgcattctcgacggcgaggccagcctgccccgggatggcgctggcctggcctccctg
gccgaacgcaagcgtggtgcctggaccgaacatgccgagcgcctggcccgcctgacgctg
gagatcctcaagctctggcacggcctgcagaagcgcttcaagggcaagatcgatctggcc
caggcggtggccctcaacgatatcaaggcccagctcggcaacctggtgtacccgggcttc
gtccgcgagactccggccctgtggttcaaggagctgccgcgctacctcaaggcggtggaa
ctgcggttcgacaagctgggcagccaggtgcagaaggaccgggtgtggagcaccgagctc
gccgggctctgggcccagtaccaggcccgggcccagaagcacgcccaggaaggcaagcgt
gacccgcagctggagctgtaccgctggtggctggaagagtaccgggtatcgctgttcgcc
cagcaattggggaccaaggtgccgatctccgacaagcgactgaacaagcagtggagccaa
gtggaggcttga
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