Pseudomonas piscis: QL104_10310
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Entry
QL104_10310 CDS
T09652
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QL104_10310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppii03400
]
QL104_10310 (mfd)
Enzymes [BR:
ppii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QL104_10310 (mfd)
DNA repair and recombination proteins [BR:
ppii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QL104_10310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WMN19779
LinkDB
All DBs
Position
complement(2176830..2180279)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAATGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
QFLLGSSLVLDVGQKLDVELMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVRLLPAKEFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLTSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRIDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDIETGVGRERFPARELPDL
AIEAKANQPLAALSRFLDEFPGRILFTAESAGRREVLLELLERLKLRPRTVDNWPDFVAS
KERLAITIAPLDEGLALDEPALALVAESPLFGQRVMQRRRREKRADASNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKSIEKCAADLAELVPEARI
GIGHGQMRESELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITTDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEDGLKDMQVEMIDRFGLLPEPTKNLIRLTQLKLQAEQLGIKKI
DGGPQGGRIEFAADTPVDPLALIKLIQGQPKRYKFEGATLFKFMVPMERPEERFNTLEAL
LESLTPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgtcctgcgtctaccgctactccccgccgccaccgggaaacagcactggggcaat
ctgcccggtgccgccctgagcctggccatcgccgaagccgccagcgccgccaagcgcttc
accctcctgctgaccgccgacagccaaagcgctgaccggctggaacaggagctgagcttc
ttcgccccggatctgccggtcctgcatttccctgactgggaaaccttgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctctatcggctgccggaa
ctggagcacggcgtgctggtggtgccgatcaccaccgccctgcaccgcctggcgccaacc
cagttcctgctgggcagcagcctggtgctggacgtgggccagaagctcgacgtggagctg
atgcgcacccgcctggaagccagcggctatcgctatgtcgacacggtttacgagcacggt
gagttcaccgtgcgtggcgcgctgatcgacctgttccccatgggcagcaagctgccctac
cgcatcgacttgttcgatgacgagatcgagaccctgcgcaccttcgacccggaaaaccag
cgttccatcgacaaggtcgactcggtgcgcctgctgccggccaaggaattccccctgcag
aaagaagccgtgacccgcttcaaggcacgctttcgcgaacgcttcgacgtggacttccgc
cgctgcccgatcttccaggacctgaccagcgggatcacccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgactacctgccccaggacacccag
gtgttctccctgccgggcatcgagcaagccgcggaaaacttctggaacgacgtgcgcaac
cgctacgaagaacgccggatcgacccttcgcggcccttgctgccgccggccgagctgttc
ctgccggtggaagactgcttcgcccggctgaagaactggccacgagtggtagccagccag
caagacatcgagaccggcgtcggccgcgagcgcttcccggcgcgcgagctgccagatctt
gccatcgaggccaaggccaaccagccgctggcggccctttccaggttcctcgacgaattc
cccgggcggatactcttcaccgccgaatccgccgggcgccgggaggtgttgctggagctg
ctggagcgcctcaagctgcgccccaggaccgtcgacaactggccggacttcgtcgccagc
aaggagcgcctggcgatcaccatcgcccccctggatgaaggcctggccctggacgaaccg
gctttggcgctggtcgccgaaagcccgctgttcggccaacgcgtgatgcagcgccggcgc
cgggagaaacgcgccgacgccagcaacgacgcggtcatcaagaacctcaccgagctgcgt
gaaggcgcgccggtggtgcacatcgaccatggcgtgggccgctacctgggcctggcgacc
ctggagatcgacaaccaggccgccgaattcctcaccctggagtacgccgagggcgccaag
ctctacgtgccggtggccaatctgcacctgatcgcccgctacaccggcagcgacgatgcc
ctcgcccccctgcaccgcctgggctccgaggcttggcaaaaggccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgagctgctggatatctatgcccgccgggcggcccgc
gaaggttatgccttcgccgaccccaaggccgactacgccaccttcagtgccggcttcccc
ttcgaggagactccggaccagcagagcaccatcgaagcggtgcgcgaggacatgctctcg
cccaagccgatggaccgcctggtctgcggcgacgtgggcttcggcaagaccgaagtggcc
atgcgcgccgcgttcatcgccgtgcatggcggcaagcaggtggcgatcctggtccccacc
accctgctcgcccagcagcactacaacagcttccgcgatcgcttcgccgactggccggtg
accgtcgaggtcatgagccgcttcaagtcggccaaggaggtcagcgcggccgtggcggac
ctggccgagggcaagatcgacatcgtcatcggcactcacaagctcttgcaggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaggaacaccgcttcggcgtgcgccag
aaggagcagctcaaggccctgcgcagcgaagtggacatcctgaccctgaccgccaccccg
atcccgcggacgctgaacatggcggtctcgggcatgcgcgacctgtcgatcatcgccacg
ccaccggcccggcgcctgtcggtgcgaaccttcgtcatggagcagaacaagagcacggtc
aaggaggccctgctgcgtgaactgctgcgtggcggccaggtgtactacctgcacaacgat
gtgaagagcatcgagaaatgcgccgccgacctcgccgaactggtgcccgaagcgcggatc
ggcatcggccacgggcagatgcgcgagagcgagctggaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccagctgcaccaa
ttgcgcggtcgcgtcggccgcagccaccaccaggcctacgcctacctgctgaccccgcca
cgccagcagatcaccacggatgcagaaaagcgcctggaagccatcgccaatacccaggac
ctgggcgccggtttcgtgctggccaccaacgacctggaaatccgcggtgccggcgagctg
ctgggcgatggccagagcggccagatccaggccgtcggcttcaccctgtacatggagatg
ctggagcgggcggtgaaggccattcgcaagggcgagcagccgaacctcgaccagcccctg
ggcggcggcccggaaatcaacctgcgcttgccggcgctgattcccgaggattacttgccg
gacgtccatgcccggctgattctctacaagcgcatcgcctcggccaccgacgaagacggc
ctgaaggacatgcaggtggagatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctgatccgcctgacccagctcaagctccaggccgagcaactggggatcaagaagatc
gacggtggcccccagggcgggcgcatcgagttcgccgcggacacgccggtggacccgttg
gcgctgatcaagctgatccagggccagcccaagcgctacaagttcgaaggcgcgaccctg
ttcaagttcatggtgccgatggaacgcccggaagagcgctttaatacattggaggccctg
cttgagagcctcaccccgaaaacagcttga
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