Pseudomonas piscis: QL104_12185
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Entry
QL104_12185 CDS
T09652
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppii
Pseudomonas piscis
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppii03016
]
QL104_12185
Enzymes [BR:
ppii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QL104_12185
Transfer RNA biogenesis [BR:
ppii03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QL104_12185
Prokaryotic type
tRNA splicing ligases
QL104_12185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TFX_C
Motif
Other DBs
NCBI-ProteinID:
WMN20108
UniProt:
A0ABY9NNF1
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All DBs
Position
2568176..2569402
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AA seq
408 aa
AA seq
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MERKTYQLLEVANGKPIKMWTQGVPVENEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTASDLPDNLAGLRSAIEQAVPHGRTSPRS
GRDKGAWGEIPRQADQAWAALHPRFKAITDKYPALANSNNRQHLGTLGGGNHFIEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFINLAQADMRQHIANLPDRDLAYFEEGSQHFDDYVEAV
AWAQDFARQNRELMMQLVIQATRKVISKPFEVALEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKNTFTLADQIRA
TAHVECRKDENVIDEIPMAYKDIDQVMDAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggaacgcaagacctaccaattgctggaagtcgccaacggtaagccaatcaagatgtgg
acccagggcgtgcccgtggaaaacgaagcccgccagcaactgatgaacaccgccaagatg
cccttcatcttcaagcacctggccgtgatgcccgacgtccacctgggtaagggatcgacc
atcggcagcgtgatccccaccgtgggcgcgatcattccggcggcggtcggggtggatatc
ggctgcgggatgatcgccgcccggacctcgctgaccgcctccgacctgccggataatctg
gccgggttgcgtagcgccatcgagcaggcggtgccccacggtcgtacctcgccacgtagc
gggcgagacaagggggcctggggcgagatcccacggcaggccgaccaggcctgggcggcc
ctgcatccacggttcaaggcgatcaccgataagtacccggcgctggccaacagcaacaac
cgccagcacctgggaaccctgggaggcggtaaccacttcatcgaggtgtgcctggacgag
gccaaccgcgtctggttcatgctccatagcggttcgcgcggcgtaggtaatgccatcggc
aacctgttcatcaacctggcccaggcggatatgcgccagcacatcgccaacctgccggac
cgcgacctggcctacttcgaggaaggtagccagcacttcgatgattacgtcgaggccgtg
gcctgggcccaggatttcgcccggcagaaccgcgagttgatgatgcaactggtgatccag
gccacccgcaaggtgatcagcaagcctttcgaagtggcgctggaggcggtgaactgccac
cacaactacgtacagaaggagcgccacttcggtgaagaggtgctggtgacccgcaagggc
gcggtgtcggcgaagaagggcgagttggggatcatccccgggtcgatgggggccaagagc
ttcatcgtccgcggattgggtaacgaggaggcgttctgctcctgcagccacggtgccggt
cgaaccatgagccggaccaaggccaagaacaccttcaccctggccgaccagatccgcgcc
accgcccatgtggagtgccgtaaggatgagaacgtgatcgacgagatcccgatggcctac
aaggacatcgaccaagtgatggacgcccagcgcgaactggtggaagtactgcataccttg
cgtcaggtggtatgcgttaaggggtag
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