Pseudomonas piscis: QL104_18140
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Entry
QL104_18140 CDS
T09652
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppii
Pseudomonas piscis
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppii03032
]
QL104_18140
03400 DNA repair and recombination proteins [BR:
ppii03400
]
QL104_18140
Enzymes [BR:
ppii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
QL104_18140
DNA replication proteins [BR:
ppii03032
]
Prokaryotic type
DNA Topoisomerases
QL104_18140
DNA repair and recombination proteins [BR:
ppii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
QL104_18140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WMN15290
LinkDB
All DBs
Position
3932062..3933099
Genome browser
AA seq
345 aa
AA seq
DB search
MPVTPDTPDLPPDLHYTDDRQPGISRRKLRGKFAYYQAQGQRITDVAEIQRINALAIPPA
YAQVWICADPKGHLQATGRDARGRKQYRYHPRWREVRDSDKYARLLQFGNALPRLRRQLQ
AQLASPGFSRDKVLATVITLLDESLIRVGNSQYARDNRSYGLTTLRNRHVQVNGNAIHFQ
FRGKSGVEHQITVRDPRLARVVKRCRELPGQQLFQYLDEDGQRHSVSSSDINLHLQQLTG
MSFTAKDYRTWAGSALALALLRRLPWQPDSEARKHLVATVKQVACELGNTPAVCRKCYIH
PALLEGFAQGELARLPRSRKRQGLKAEEAALARFLRDLGQPKPPA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttaccccggacactcccgacctgcccccagacctgcactacaccgacgaccgc
cagcccgggatcagccggcgcaagctgcgaggcaagttcgcctattaccaagcccagggc
cagcgcatcaccgacgtagccgagatccagcggatcaacgccctggcgatcccgccggcc
tacgcccaggtatggatctgcgccgaccccaagggccacttgcaggccaccgggcgtgat
gcccgcgggcgcaagcagtatcgttaccacccacgttggcgcgaggtgcgcgacagcgac
aagtacgcccggctgttgcagttcggcaatgccctgccccggctgcgccgccagctgcag
gcgcaactggccagtcccgggttcagccgcgacaaggtcctggccacggtcatcaccttg
ctcgatgaaagcctgatccgggtcggcaacagccagtacgccagggacaatcgctcctac
gggctgactaccctgcgtaaccgccatgtccaggtcaacggcaatgccattcacttccag
tttcgtggcaagagcggcgtcgagcaccagatcacggtccgggacccgcgcctggcacga
gtggtcaagcgctgccgggagttgcccggccagcagctgttccagtacctggacgaagac
ggccagcggcactcggtgagttcgtcggatatcaatctgcacctgcagcaactgaccggg
atgagcttcaccgccaaggactaccgcacctgggccggtagcgctctggccctggcgctg
ctgcggcgcctgccatggcagccggactcggaagccaggaaacacctggtggccaccgtc
aagcaagtggcctgcgaactgggcaataccccggcggtctgccgcaagtgctacatccat
ccggcgctgctggagggtttcgcccaaggtgaactggcccgcttgccacgctcgcgcaaa
cgccagggcctgaaagccgaggaagccgccctggcacgctttctccgagaccttgggcag
cccaagccgccggcttga
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