Pseudomonas piscis: QL104_23055
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Entry
QL104_23055 CDS
T09652
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ppii
Pseudomonas piscis
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppii03009
]
QL104_23055 (rlmD)
Enzymes [BR:
ppii01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QL104_23055 (rlmD)
Ribosome biogenesis [BR:
ppii03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QL104_23055 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltransf_11
Methyltransf_23
PCMT
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Methyltransf_15
RrnaAD
Methyltransf_12
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
WMN16205
LinkDB
All DBs
Position
complement(4980462..4981814)
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AA seq
450 aa
AA seq
DB search
MAKHERGLRFQPAGGSRAPQVPVGKKQRLSIQRLANDGRGIAFVEGRTWFVNGALAGEEV
EARVLGAHGKVVEARAERIFSASQLRRPAPCAHAGRCGGCSVQHLPHEEQLALKQRMLAE
QLSKVAGIEPEAWAEPLSGPEFGYRRRARVAVRWDSKARQLEVGFRAAGSQDIVAIDDCP
VLVSELQPIMQRLPAMLRRLSKPQALGHVELFSGSALAVLLRHMAPLSESDLGILKDFCD
FHQAQLWLQGEGEPQPFDSSQALGYRLAAWDLHLAYRPGDFVQVNAGVNEAMVAQALEWL
APLAGERVLDLFCGLGNFALPLARQVREVVAVEGVATMVARAAENAAGNNLHNTRFFQAD
LSQPLGTAEWAAEGFSAVLLDPPRDGAFEVVRNLAALGAKRLVYVSCNPATLARDTVELT
RQGYRLKRAGILDMFPQTAHVEAMALFEAS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcacgagagaggcctgcgcttccagcctgcgggcggcagccgggcgccacag
gtgccggtgggcaagaagcagcgcctgagcatccagcgcctggccaacgacggtcgcggt
atcgccttcgtcgaagggcgcacctggttcgtcaacggtgccctggctggcgaggaagtc
gaggcccgggtcctgggtgcccacggcaaggtggtcgaggcccgcgccgagcggatcttc
agcgccagccagttgcggcgccctgcgccctgtgcccacgccgggcgctgcggtggctgc
agcgtccagcacttgccccacgaagagcaattggcccttaagcaacgcatgctcgccgag
caactgtccaaggtggccggcatcgagcccgaggcctgggccgagcccttgagtggcccc
gagttcggctatcgacgccgggccagggtggcggtgcgctgggacagcaaggcccgccag
cttgaagtgggctttcgcgcggccggcagccaggacatcgtcgccatcgacgactgcccg
gtgctggtgtctgagttgcagccgatcatgcagcgtttgcccgccatgttgcggcgcttg
agcaagccccaggcgctggggcatgtggagctgttcagcggctcggccctggcggtgctg
ttgcggcatatggcgccgctgtcggaaagcgacctggggatcctcaaggatttctgcgat
ttccatcaggcgcagttgtggttgcagggcgaaggcgagccgcagcctttcgattcatcg
caggccctgggctatcgcctggcggcttgggacctgcacctggcctaccggccgggagac
ttcgtccaggtcaatgccggggtcaacgaggcgatggtggcccaggccctggagtggttg
gctccactggctggcgagcgggtcctggacctgttctgcggcctgggcaacttcgccctg
ccgctggctcgccaggtgcgggaagtggtggcggtggaaggcgtggcaaccatggtggcg
cgggcggcggaaaatgccgccggcaacaatttgcataacacgcgcttttttcaagccgat
ttatcccagcccctgggtactgccgagtgggccgccgagggcttttctgcggtactcttg
gacccaccccgcgacggtgctttcgaggtggttcgcaatcttgcggccctgggcgccaag
cggttggtatatgtgtcatgcaacccggcgactctggcccgtgacacggtcgaactgacc
aggcagggctatcggttaaaacgtgccgggattctcgatatgtttcctcagacggcgcat
gtcgaggccatggcgttattcgaagcgagctag
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