Pseudomonas piscis: QL104_24055
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Entry
QL104_24055 CDS
T09652
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QL104_24055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppii03000
]
QL104_24055
03400 DNA repair and recombination proteins [BR:
ppii03400
]
QL104_24055
Enzymes [BR:
ppii01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
QL104_24055
Transcription factors [BR:
ppii03000
]
Prokaryotic type
Helix-turn-helix
AraC family
QL104_24055
DNA repair and recombination proteins [BR:
ppii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
QL104_24055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
HhH-GPD
AfAlkA-like_TBP-like
Motif
Other DBs
NCBI-ProteinID:
WMN16396
LinkDB
All DBs
Position
complement(5183654..5184547)
Genome browser
AA seq
297 aa
AA seq
DB search
MNPQQRLLLPYQGPYDWQAMLGFFAVRAIGGLEVVQDGVYARSFELDGRQGTLSLRPGPG
EQLDLRLNLGGAEPSPSLIGQVVMRVRRQFDLDADVLRIHQELAADPLLQPLLLAHRGLR
VPGAWDGFELAIRAVLGQQITVAGAIRLATRLVAVHGQPLALPDPGWPGLTQVFATPAAL
AVADLAALGMPASRGRTLSTVAQALLADPGLLDPKASLQQGLDGLLRLVGIGDWTAHYIA
LRHMREMDAFPAADVGLLNAMATLQGQRPSARQLLARAEAWRPWRGYAAQQLWTLGS
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgcagcagcggctcttgctgccctaccaggggccctatgactggcaggccatg
ctggggttcttcgcggtgcgcgccatcggcggcctggaggtggtgcaggacggtgtctac
gctcgcagcttcgaactcgatgggagacagggcaccctgagcctgcgccccgggcctggc
gagcagttggatttgcgcttgaacctggggggcgcggaaccgtccccgtcactgatcggc
caggtggtcatgcgcgtgcgccggcagttcgacctggatgccgacgtactgcgtatccac
caggagctggccgccgacccgctgttgcaacccttgctgctggcccatcgcgggttgcgt
gtaccgggcgcctgggatggcttcgaactggcgatccgcgcggtactgggccagcagatc
acggtagcgggtgcgatccgcctcgccactcggctggtggcggtgcatggccagccactg
gcactccccgatcccggttggccgggcctgacccaggtgttcgccacgcccgccgccctg
gccgtggcggacctggctgccctgggcatgcccgccagccgtggccggaccttgtccacc
gtggcccaagcattgctggcggatccgggtttgctcgaccccaaggccagcttgcagcag
gggctcgatggcctgctgcggctggtgggaatcggtgactggacggcgcattacatcgcc
ttgcggcacatgcgtgagatggacgctttcccggcggccgatgtgggcctgctcaatgcc
atggccaccctccagggccagcggcccagtgcccggcaactgctggcccgggccgaggcc
tggcggccctggcgcggttatgcggcgcagcagttgtggacattgggtagctga
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