Pseudomonas piscis: QL104_24460
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Entry
QL104_24460 CDS
T09652
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
QL104_24460 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppii03400
]
QL104_24460 (sbcB)
Enzymes [BR:
ppii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
QL104_24460 (sbcB)
DNA repair and recombination proteins [BR:
ppii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
QL104_24460 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QL104_24460 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QL104_24460 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DUF3891
DUF2524
Motif
Other DBs
NCBI-ProteinID:
WMN16475
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All DBs
Position
complement(5268373..5269800)
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AA seq
475 aa
AA seq
DB search
MTSLFWYDYETTGINPRNDRPLQVAGIRTDLALNEIDEPVNLYCQPADDILPHPAACMIT
GITPQRLAERGLSEADFMTRVHQQLARPGTCGAGYNTLRFDDEMTRYGLYRNFFDPYARE
WQGGNSRWDLIDVVRAAYALRPQGIAWPEEQGQVTLKLERLTAENGIDHGQAHEALSDVR
ATIALARLIRDKQPKLYEWLFQLRSKQRVMDQIRLLQPMVHISGRFSAARHYVGVVLPLA
WHPRNRNALIVCDLHLDPQGLLDLDAQTLRQRLYTRREDLAEGELPVPLKLIHINRCPVV
APLNVLRVEDQQRLHLDMEEYQRRALRLSEAREVWQDKLSLIYGPDEFAASEDPEQQLYD
GFIGDRDRRLCEQVRQADPQHLALQEWPFDDERLPELLFRYRARNFSETLSKDEQERWRG
FCQQRLLDPQLGAPNTLESFRQALEQSLLSADPSQRQVLEQWRQHVRDLALRLGL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccctcttttggtacgactacgaaaccactggcatcaacccgcgcaacgaccgt
ccgttgcaagtggcaggtattcgcaccgacctggcgctcaatgaaattgacgagccggtc
aacctctattgccagcccgccgacgatatcctgccgcacccggcagcttgcatgatcacc
ggcatcactccgcagcgcctggccgagcgcgggttgagcgaggctgatttcatgacccgg
gtgcatcagcagttggcccgcccgggaacctgtggcgcgggctacaacaccttgcgtttc
gacgacgagatgactcgctacggcctgtatcggaatttcttcgacccctatgcccgggag
tggcaaggcggcaacagtcgctgggacctgatcgatgtggtacgggcggcctatgcgctg
cggccccagggtatcgcctggcctgaagaacagggccaggtgacgctgaagctggagcgc
ctgacggcagagaatggcatcgaccatggccaggcacacgaggccttgtccgatgtgcga
gcgaccattgccctggcgcgactgatccgcgacaagcagcccaagctctatgaatggttg
ttccagttacgcagcaagcagcgggtgatggaccagatccgcctgttgcagccaatggtg
cacatttccgggcgtttctccgccgcgcggcattatgtcggcgtggtgttgcccctggcc
tggcatccgcgcaatcgcaatgcgttgatcgtctgcgacctgcacctggatccccaaggg
ctcctggacctggatgcccagacgttgcgccagcgcctgtatacccggcgtgaagacctg
gccgaaggcgaattgccggtgccgttgaaactcatccatatcaatcgctgcccggtggtg
gcgccgttgaatgtgttgcgtgtcgaagatcaacagcgcctgcacttggatatggaagaa
taccagcgccgcgctttgcgtctgagcgaggctcgggaagtttggcaggataaactttcg
ctgatttacggacctgatgaattcgctgccagcgaggatccggagcagcagttgtacgat
ggctttattggtgatcgcgatcgccgcttgtgtgagcaagtgcgccaggccgatccgcag
catttggcactgcaagaatggccgttcgatgatgagcggttgccggaacttctgttccgc
taccgtgcccgtaacttttcggaaacattgagcaaggatgagcaagagcgctggcgcgga
ttctgccagcaacgtttgcttgatccgcaactgggggcgcccaataccctggaaagtttt
cggcaagctctggagcaatccctgttaagtgctgatccgagtcaacgccaggtgctggag
caatggcggcaacatgttcgcgatctggccctgcgactggggctttaa
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