Pseudomonas piscis: QL104_27420
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Entry
QL104_27420 CDS
T09652
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QL104_27420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppii03019
]
QL104_27420
Enzymes [BR:
ppii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QL104_27420
Messenger RNA biogenesis [BR:
ppii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QL104_27420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WMN17036
UniProt:
A0ABY9NF24
LinkDB
All DBs
Position
complement(5880625..5881959)
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AA seq
444 aa
AA seq
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MTFATLGLIEPLLRALEPLGYQAPTPVQAQAVPAVLAGRDLMAAAQTGTGKTAGFALPLL
QLLTLEGPKVDSNSVRALILVPTRELAEQVHDSVRQYAEHLPLRTYAVYGGVSINPQMMK
LRKGVDLLVATPGRLLDLFRQNAVKFGQLQTLVLDEADRMLDLGFSEELKSIYAALPKKR
QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAASTVKQWVVPVDKKRKPELFSHLLR
KNRWKQVLVFAKTRNGVDALVEKLQGQGVNADGIHGDKPQATRQRALDRFKLGEIQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYVHRIGRTGRAGSTGEAISLVCADEVNLLSAIE
MLTRQTLKRHEEQDFEPEHRVPETDASGQVVKKPKKPKKPKAAGGAGKRNLGRWVDSGEV
AAEPAVKPVRKVPAFNTGPRKRKP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgccactctcggcctgatcgaacccttgctgcgcgcccttgaaccccttggc
taccaggccccgaccccggtgcaggcccaggcggttccggcggtgctggccggtcgcgac
ctgatggccgcagcccagaccggcaccggcaagaccgccggtttcgccctgccgctgttg
caattgctgaccctggaaggtccgaaggtcgacagcaattcggtgcgggcgctgatcctg
gtgccaacccgcgagctggccgagcaggtccacgacagcgtgcgccagtacgccgaacac
ctgccgctacgcacctacgcggtgtatggcggagtcagcatcaacccgcagatgatgaag
ctgcgcaagggtgtcgacctgctggtggcgacacctggccgcctgctggacctgttccgg
cagaacgcggtgaagttcggccagttgcagaccctggtgctggatgaggccgatcgcatg
ctcgacctggggttctccgaagagctcaagagcatctacgcagccctgccgaaaaagcgc
cagaccttgctgttctccgcgacgttctccgatgccatccgcctgttggccgggcagatg
ctcaatgacccgctgagcatcgaggtcagcccgcgcaacgtcgccgccagcacggtcaag
caatgggtggtaccggtggacaagaagcgcaagccggaactgttcagccacctgctgcgc
aagaaccgctggaagcaggtgctggtgttcgccaagacccgtaacggcgtggatgccctg
gtggagaaactccagggccagggcgtgaatgccgacggcatccacggcgacaagccccaa
gccacgcgccagcgtgccctggaccggttcaagctgggcgagatccagatcctggtggcg
accgatgtggcggcccgcggcctggacatcgaggatctgccgctggtggtcaacttcgac
ctgccgatcgtcgccgaggactacgtccaccgcatcggccgcaccgggcgtgccggttcc
accggtgaagcgatttccctggtctgcgccgatgaagtgaacctgctgtcggcgatcgaa
atgcttacccgccagaccctcaagcgccatgaggagcaggatttcgagcccgagcaccgg
gtgcccgagaccgacgccagtggccaggtggtgaagaagcctaaaaagccgaagaagccc
aaggctgccggtggtgccggcaaacgcaacctggggcgttgggtcgatagtggcgaagta
gccgccgagcctgcggtgaagccggtgcgcaaggtgccggccttcaacaccggcccgcgc
aagcgcaagccgtaa
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