Pseudomonas piscis: QL104_28310
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Entry
QL104_28310 CDS
T09652
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QL104_28310 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppii03021
]
QL104_28310 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppii03400
]
QL104_28310 (rpoC)
Enzymes [BR:
ppii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QL104_28310 (rpoC)
Transcription machinery [BR:
ppii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QL104_28310 (rpoC)
DNA repair and recombination proteins [BR:
ppii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QL104_28310 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
BSH_YknX
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WMN17210
UniProt:
A0ABY9NF89
LinkDB
All DBs
Position
complement(6058882..6063081)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRISETVNDRDGGSVSATRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDRNGDEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVVVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDVKDRPAAGKDIRPAVKM
VGMDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTHVLVENERLSSEDKFIAKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHNERKRRRDADKPLR
VSASEVEAALTEALNSSGS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaattaccgtacgttcaaacctgagcgcgacggcctgttctgcgccaag
atctttggtccagtgaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgtggtgtgatctgcgagaagtgcggcgttgaagtcgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctctccagtcgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgagcgcgtgctctac
ttcgagagctacgtcgttatcgatccgggcatgaccaccctggagaagggccagctgctg
aacgacgagcagtacttcgaagcgttggaagagttcggtgatgacttcgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgacctggagcacgagatcggccgc
ctgcgtgaagagattccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagttgatggaagccttccagggctccggcaacctgcctgagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggttccgctggatggcggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctgtctgcgcctgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgcactgctcgacaacggtcgtcgcggtcgcgccatcaccggttcgaac
aagcgtcctctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgggttgactactccggccgttcggtaattaccgtaggtccgact
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgtgagctgccagaggtttgggatgttctcgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgagcccgta
ctgatcgaaggtaaggctatccagctgcaccctctggtttgtgcggcgtacaacgccgac
ttcgacggtgaccaaatggccgtgcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccgatcatc
gttccgtcgcaggacgtggtactgggtctgtattacatgacccgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggacctgcaggaagtcgaccgcgtattccgcgccggc
gaagctgctctgcatgccaagatcaaggttcgtatcagcgaaaccgtcaatgatcgggat
ggcggcagcgtgagcgccacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtgccgaagggtctgtcgttcgacgtcgtcaacctgccgatgaagaagaaggcg
atttccaagctgatcaaccagtgctaccgcgtggtcggtctgaaagagaccgttatcttc
gctgaccagttgatgtacaccggttttgcctactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgccaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggtgagaagtacaac
aaggtgatcgacctgtggtcgaaggccaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaggtcgtcgaccgtaatggcgatgaagtcgagcaagagtcgttcaac
tcgatgtacatgatggccgactcgggtgcgcggggttccgcggctcagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgagacgccgattact
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgacccacggtgctcgt
aaaggcctggcggataccgcattgaagactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaagacctggtggttaccgagatcgattgcggtaccgagcacggcctg
ctgatgactccgcacattgaaggcggtgacgtagtagagcctctgggtgagcgcgtattg
ggtcgtgttatcgcccgtgatgtattcaagccaggcaccgaggacgttatcgttcctgcc
ggtaccttggtagacgagaagtgggttgagttcatcgagctcaacagcatcgacgaagtg
gttgtgcgttcgccgatcagctgtgaaacccgctatggcatctgcgccaagtgctacggc
cgcgatctggctcgtggtcaccaggtgaacattggtgaggctgtaggtgtaattgccgct
cagtccatcggtgagccgggtacccagttgaccatgcgtacgttccacatcggtggtgcg
gcgagccggacctcggcagccgacagcgtccaggtgaagaacggcggtaccgtgcgcctg
cataacctgaagcacgtagaacgtgtcgacggtcacctggttgctgtgtctcgttctggt
gagttggctattgccgacgacttcggtcgcgagcgcgagcgctacaagctgccttacggt
gccgtgatttcggtgaaggaaggcgacaaggtcgacgctggtgccatcgtggccaagtgg
gacccgcacacccacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagaccgacgaattgaccggtatgaccaacatcgaa
gtgctcgatgtcaaagaccgtccagctgccggtaaggacattcgtcctgccgtgaagatg
gtgggtatggatggcaaggatctgctgctgccaggtaccgacgtaccggcccagtacttc
ctgccggctaacgccctggttggtgttgccgacggtgcccagattgcgatcggtgatgtt
atcgctcgtattccgcaggaaacctcgaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacttgttcgaggctcgtcgtccgaaagaggcgtcgatcctggcggaagtcagc
ggtaccatcgcgttcggtaaggaaaccaagggcaagcgtcgcctggtcatcaccccgaac
gatggtagcgatccgtacgaggaactgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgacccacacgacatc
ctgcgtctgctgggtgtaagtgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagacgatcctgcgtcagatg
ctgcgtaaggtcgagatctccgagtccggtgattccagcttcatcaagggcgaccagatg
gaactgactcacgtgctggtggaaaacgagcgcctgagctccgaagacaagttcatcgcc
aagttcacccgcgtactgctgggtatcaccaaggcgtccttgtctaccgaatcgttcatc
tcggcggcctctttccaagagaccactcgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctacgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggctggt
actggcctggcttaccacaacgagcgtaagcgtcgtcgtgatgccgacaaacctctgcgt
gtgagcgcaagtgaagtcgaagcagcactgaccgaagcgctgaactccagcggtagctga
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integrated database retrieval system
