Pseudomonas piscis: QL104_29340
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Entry
QL104_29340 CDS
T09652
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppii
Pseudomonas piscis
Pathway
ppii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QL104_29340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppii03019
]
QL104_29340
Enzymes [BR:
ppii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QL104_29340
Messenger RNA biogenesis [BR:
ppii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QL104_29340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WMN17403
UniProt:
A0ABY9NHL1
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All DBs
Position
6290066..6291934
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AA seq
622 aa
AA seq
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MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSIDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLASKLLHDPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAMAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDTRNSRNARAPRGDNPNGGGGGGG
RKDKGKDKGGKDKPARGERQAREQKPRENAAPREQRQPAPRPERAPDEFLDDDVDNFGNR
ADYVSPYQNKGNQQGRGRRPGTPGQGQGTAGSGQRNGGQGRNGNPRSGGAASNSNGGTPA
KRNGQRSGASRDGQGRRDESRNRRPGRDDQGRQEPAVQNPRSNQPKIMHKESKVDRFPTP
EQLEQLPSRPRGEKPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgctatcgaagcagccggc
tatacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctgatggtcgcggcacagacaggtactggtaaaaccggcggtttcgccctcccgatcctg
gagcggctgtttcccaatggtcatccggacaaatcccagcgtcacggcccgcgccagcct
cgcgtcctggtcctgaccccgactcgcgaactggccgcgcaggtgcacgacagcttcaag
ctgtacgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccatggcccgtggcgtcgacgtgctggtggcctgccccggccgcctg
ctggacctggccggccagggcagcatcgacctttcccacgtggaaatcctggtcctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtcaagaaggtcctcgcccgc
ctcccggccaagcgccagaacctgctgttctccgcgaccttctccaaggacatcacggac
ctggccagcaagctgctgcacgaccccgagcgcatcgaggtcaccccgccgaacaccacg
gtggagcgcatcgagcagcgggtgttccgcctgccggccagccacaagcgcgcgctgctg
gcgcacctgatcaccgctggcgcctgggaacaggtcctggtgttcacccgcaccaagcac
ggtgccaaccgcctggccgaatacctggacaaacatggcctgagcgccatggcgatccac
ggcaacaagagccagaacgcccgtaccaaggccctggccgacttcaaggccggcgaagta
cggatcctggtggcgaccgacatcgccgcccgtggcctggacatcgaccaactgccccat
gtggtcaacttcgaactgcccaacgtcgatgaagactacgtgcaccgcatcggccgtact
ggccgggccggtcgttcgggcgaggccatctccctggtagcccccgacgaagagaagctg
ctcaagagcatcgagcgcatgaccaagcagaagatcgccgacggcgacctgatgggcttc
gatgccagcgcggtggaagccgagaaaccggaagtgcgcgagcgtccggacacccgcaac
tcgcgcaacgcccgcgcaccccgtggcgacaaccccaacggcggcggtggcggcggtggt
cgcaaggacaagggcaaagacaagggcggcaaggacaagccggcccgtggcgaacgccag
gctcgcgagcagaagcctcgcgagaacgccgcgccgcgtgaacagcgtcaacctgcccca
cgcccagaacgggcgccggacgagttcctcgatgacgacgtggacaacttcggcaaccgc
gccgactacgtcagcccataccagaacaagggcaaccagcaaggtcgcggccgccgcccc
ggaactccgggccagggccaaggcactgctggcagtgggcagcgcaacggcggccagggt
cgcaatggcaacccgcgcagtggtggcgcagccagcaacagcaacggtggcacgccggcc
aaacgcaacggccagcgcagtggtgcttcccgtgatggccagggtcgtcgcgacgagtcg
cgcaatcgccgtccgggccgtgacgatcaaggccgccaggaacccgcagtgcagaatcca
cggagcaaccagccgaagatcatgcacaaggagtccaaggtcgatcgtttcccgacgcct
gagcaactggagcagttgccaagccgcccacggggcgaaaaaccggccctgctgacgcgc
aaccgctaa
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