Pseudomonas piscis: QL104_30250
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Entry
QL104_30250 CDS
T09652
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppii
Pseudomonas piscis
Pathway
ppii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QL104_30250 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppii03021
]
QL104_30250 (rho)
03019 Messenger RNA biogenesis [BR:
ppii03019
]
QL104_30250 (rho)
Transcription machinery [BR:
ppii03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QL104_30250 (rho)
Messenger RNA biogenesis [BR:
ppii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QL104_30250 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
WMN17577
UniProt:
U6ZU49
LinkDB
All DBs
Position
complement(6477256..6478515)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSSDASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPNDRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NKSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggtgaggaaatctccggtgatggcgtgctggagatcctccaggac
ggcttcggcttccttcgctcctccgatgcctcctacctggccgggccggacgatatctac
gtgtcgccaagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttacttcgcgctgctcaaggtcgataccatcaac
tacgaccgtcccgagaacgccaagaacaagatcctgttcgagaacttgaccccgctgttc
cccaacgatcgcctgaagatggaagccggcaacggttccaccgaagacctcaccggccgt
gtcatcgacctgtgcgccccgatcggcaagggccagcgtggcctgatcgtcgctccgccg
aaagcgggtaaaacgatcatgctgcagaacattgcggccaacatcacccgcaacaacccc
gagtgccacctgatcgtcctgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgcaccgtgcgtggcgaagtggtcgcctccaccttcgacgagccgccaacccgccacgtg
caagtggccgagatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtgatcctgctggactccatcacccgcctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctgaccggtggtgtcgatgcccacgccctggagaaacccaagcgtttc
ttcggcgccgcgcggaacatcgaggaaggcggctcgctgaccatcatcgctaccgcgctg
gtcgagaccggctcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcccctggaccgtcgtatcgccgagaagcgcgtattcccggccatcaacatc
aacaagtccggtacccgccgcgaagagctgctgacggccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcatccgatggatgaagtcgccgccatcgagttcctggtc
gacaagctgaagcagaccaagaccaacgatgaattcttcctgtcgatgaaacgcaagtaa
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