Photobacterium piscicola: ACJZU6_01135
Help
Entry
ACJZU6_01135 CDS
T11087
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJZU6_01135 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppil03019
]
ACJZU6_01135 (recQ)
03400 DNA repair and recombination proteins [BR:
ppil03400
]
ACJZU6_01135 (recQ)
Enzymes [BR:
ppil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACJZU6_01135 (recQ)
Messenger RNA biogenesis [BR:
ppil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACJZU6_01135 (recQ)
DNA repair and recombination proteins [BR:
ppil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACJZU6_01135 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
DUF6972
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
XLM58302
LinkDB
All DBs
Position
1:complement(230963..232807)
Genome browser
AA seq
614 aa
AA seq
DB search
MSVVVPLPVTPSLLSSQEILQDVFGYQEFRQGQQAVIEAITAGNDCLVIMPTGGGKSLCY
QIPALMLSGLTLVISPLISLMKDQVDQLNANGVSAGCIHSAMSREEIQATFDAMQNGELQ
LVYASPERVLMRDFIERLQQLDLTMVAVDEAHCVSQWGHDFRPEYAALGLLKQQFSPLPV
MALTATADDATRQDIISRLGLTDPHCYLGSFDRPNIRYTLWEKHKPLTQLSRYLATVRGQ
CGIIYCNSRKKVEQISEKLCESGIRAAAYHAGMEYQQRSAVQEAFQRDDIHVVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLYDPADLAWLRRCVDEKPH
DAQREVELHKLHAMGAFAQAQSCRRQVLLHYFGEDQRQPCGNCDVCLDPPQQFDAVEAAQ
KALSCVYRVNQNFGITYVIDVLRGMQNQRIREYGHDKLTTYGIGRDYSHEYWVSILRQLI
HRGFLTQNISRNSVLQLTEQARPLLRAEMALSLAVPRLDTAVRSSKVDRMANRQYDKKLF
AKLRKLRKAIADEEDIPPYVVFNDASLMEMAERLPSSKGEFLAINGVGQRKLEKFGIVFL
QLIGDHLMAVDEHN
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttgttgttcctttgcccgtgacgccatcattattatctagccaagaaattttg
caggatgtgtttggctatcaagaatttaggcaaggccaacaagcagtgattgaagcgatc
actgcgggtaatgactgtttggtgattatgcccactggtggcggtaaatctctgtgctat
caaattccggcgttaatgctgtcgggattaaccttggtgatctcaccgctaatttcgtta
atgaaagatcaagtcgaccaattgaatgccaatggtgtcagtgctggctgtattcactca
gcaatgtcgcgtgaagagattcaagcgacgtttgatgcgatgcaaaatggcgagttgcaa
ttagtttatgcttcacctgaacgggtgttaatgcgggattttattgaacggttgcagcaa
ctggatttaacgatggtggcagtggatgaggcccactgtgtttctcaatggggacatgat
tttcgaccagaatatgcagcattagggctactaaaacagcaattttcaccgttgcctgtg
atggcgttaacggcgacggctgatgacgcaacacgacaagacattattagtcgcttgggg
ttaaccgatcctcattgttatttaggcagttttgatcgacctaatattcgctataccctc
tgggaaaaacataaaccgttaacgcaattaagccgctatttggcgacggtgcgcggtcag
tgcgggattatttattgtaatagccgcaagaaagtggaacagattagcgaaaaattgtgt
gaaagtggcattcgtgccgcggcgtatcatgcgggcatggagtatcaacaacgcagcgct
gttcaagaggcttttcagcgagatgatattcacgtggttgtggcgacggtcgcatttggg
atgggaattaataaacccaatgtgcggtttgtggtccattttgatattccgcgcaacatt
gaatcgtattatcaagaaacaggacgagcaggacgcgatggtttacctgctgaagcgctg
ctgctttatgatccagccgatttagcgtggttacgccgttgtgttgatgaaaaacctcat
gatgcacagcgtgaggtggaattacataaattacatgcgatgggagcttttgctcaagcg
caaagttgtcgtcgccaagtgttattacattattttggtgaagatcaacgtcaaccttgt
gggaactgcgatgtgtgccttgatcccccgcaacaatttgatgccgttgaagccgctcaa
aaagccttatcctgtgtataccgtgtgaatcagaattttggtattacctatgttattgat
gttttacgaggtatgcaaaatcaacgtattcgtgaatatggccatgataaattaaccact
tatggtattggacgtgactatagccatgaatattgggtgagtattttacgccaattaatt
catcgcggttttttaactcaaaatattagccgcaattcggtgttacaactcaccgagcaa
gcgcgaccattattacgtgctgaaatggcgttatcattggcggtgccacggctggatact
gcggttcgtagcagtaaagtagatcgaatggccaatcgtcagtatgacaaaaaattattt
gccaagttacgtaagttacgcaaagccattgctgatgaggaagatattccaccttatgtg
gtctttaatgatgccagtttaatggaaatggcagaacgattacccagttcaaaaggtgaa
tttttagcgattaatggggttggccagcgtaagttagaaaaatttggcatcgtattttta
caattgattggtgatcatttaatggcggtcgatgaacataactaa
DBGET
integrated database retrieval system
