Photobacterium piscicola: ACJZU6_01145
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Entry
ACJZU6_01145 CDS
T11087
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03420
Nucleotide excision repair
ppil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACJZU6_01145 (uvrD)
03430 Mismatch repair
ACJZU6_01145 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppil03400
]
ACJZU6_01145 (uvrD)
Enzymes [BR:
ppil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACJZU6_01145 (uvrD)
DNA repair and recombination proteins [BR:
ppil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACJZU6_01145 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
ACJZU6_01145 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
XLM58303
LinkDB
All DBs
Position
1:complement(235227..237398)
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AA seq
723 aa
AA seq
DB search
MDVSLLLDGLNDKQREAVAAPLGNHLVLAGAGSGKTRVLVHRIAWLLAVEQASPYSIMSV
TFTNKAAAEMRGRINELMHGSSAGMWNGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQM
RLLRRLIKAQNLDEKHWPARQGAWYINGKKDEGLRPQHVETYNDPVEQTWLRIYTAYQEA
CDRAGMVDFAELLLRSFELLRDNKHIREHYQARFKHILVDEFQDTNNIQFAWLRLMAGPD
CHVMIVGDDDQSIYGWRGAQVENIQRFLSDFNNASSIFLEQNYRSTANILNAANELIANN
TARMGKNLWTEDGDGEPISLYSAFNELDEARFAVGKIKEWREQGGSLSDTAFLYRSNAQS
RVLEEALIQAGMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGLGD
RTLETIRLAARDRGLTMWQSSLALLDEKVLAGRAANALQRFIELINALEDDTAELPMYQQ
TDDVIRHSGLRAMYEQEKGEKAQARIENLEELVTATRQFEIPEEAAEMSPLSAFLAHAAL
EAGDGQADAFEDAVQLMTMHSAKGLEFPIVFMVGVEEGMFPSSRTIEEADRLEEERRLCY
VGMTRAMKKLYITYAEMRRLYGKDNFHKPSRFIREIPEQYVEEVRMKAQVSRPVSSGRFS
QTQVNNNFNETGFSLGQRVQHAKFGEGTIINFEGSGAQSRVQVAFNGEGIKWLVTQYAKL
TAL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcacttctattagatggcctcaatgacaaacaacgcgaggcggtggctgcg
ccgttgggtaatcacctagtattggcgggagcaggtagcggtaaaacccgtgtgctagtg
catcgcattgcttggttgttggcggttgaacaagcatcaccgtactcgattatgtcggtc
acgtttactaataaagcggccgcagaaatgcggggtcgaattaatgaattaatgcacggc
tcaagtgcaggcatgtggaatggcaccttccatggtttatgtcatcgcatgttacgcgcc
cactatttggatgcgcgcctacctgaagattttaatattcttgattctgatgatcagatg
cggttattacgccgcttgattaaagcgcagaatttagatgaaaagcattggcctgcccgt
caaggtgcgtggtatatcaacggcaagaaagatgaaggtttacgcccgcagcacgttgaa
acctataatgatccagttgagcaaacgtggttacgcatctataccgcttaccaagaagcc
tgtgatcgtgcggggatggttgattttgccgagttattactgcgctcgtttgagttatta
cgcgataacaaacatattcgtgaacattaccaagcacgctttaaacatattttggtggat
gagtttcaagacaccaacaatattcaatttgcatggctacggttaatggcgggtcctgat
tgtcatgtgatgatcgtcggtgatgatgaccaatctatttatggttggcgtggcgcacaa
gttgaaaatattcagcgttttttaagtgattttaataacgcatcctcaatatttttagaa
cagaactaccgctcgactgccaatattcttaatgctgccaatgaattaattgccaataat
actgctcgtatgggtaagaatttatggactgaagatggcgatggcgagccaatttctttg
tattctgcttttaatgaactcgatgaagcccgctttgctgttggtaaaattaaagagtgg
cgtgaacaagggggaagcctcagtgataccgccttcttataccgcagtaatgcgcaatcg
cgagtattagaagaagccttaattcaagcgggcatgccataccgtatttatggcggcatg
cgcttctttgaacgccaagaaattaaagatgcgttgtcttatttgcgtttaattgctaac
cgtaatgatgatgcttcgtttgagcgggtggttaatacaccgacgcgtggtttgggtgat
cgcactttagagacgattcgtttagcagcacgtgatcgcggtttaaccatgtggcaatca
agtctagcgctattagatgaaaaagtgctagcgggacgcgcggcaaatgcattacagcgt
tttatcgaattaattaatgccttagaagacgatactgctgaattgccaatgtaccaacag
acggatgatgtcattcgtcactctggtttgcgggcaatgtatgagcaagaaaaaggcgaa
aaagcgcaagcacgaattgagaacttagaagaattagtcactgcaacccgtcagtttgaa
attccagaagaagccgctgaaatgagtccattatctgctttcttagcccatgcggcttta
gaggcgggtgacggtcaagcggatgcctttgaagatgcggtgcaattgatgaccatgcac
agtgctaaaggtctagaatttccgattgtctttatggtgggggttgaagaagggatgttc
ccaagctcacgtaccattgaagaagcggatcggttagaagaagaacgtcgcttgtgttat
gtcggcatgacacgagcaatgaagaaactgtatatcacttatgctgaaatgcgccgctta
tatggtaaagataacttccataaaccgtctcgttttattcgtgaaattcctgagcaatat
gttgaggaagtacgaatgaaggcgcaggtatcacgtccggtgagcagtggccgttttagc
caaactcaagtgaataataatttcaatgagaccggttttagtctaggacagcgggtgcag
catgctaaatttggtgaaggcacaatcattaactttgaaggtagtggcgcccaaagtcga
gtgcaagtcgcctttaatggtgaagggattaagtggctagtgacccaatacgcgaagtta
accgccctataa
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