Photobacterium piscicola: ACJZU6_04845
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Entry
ACJZU6_04845 CDS
T11087
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03030
DNA replication
ppil03430
Mismatch repair
ppil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACJZU6_04845 (dnaE)
03430 Mismatch repair
ACJZU6_04845 (dnaE)
03440 Homologous recombination
ACJZU6_04845 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppil03032
]
ACJZU6_04845 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppil03400
]
ACJZU6_04845 (dnaE)
Enzymes [BR:
ppil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACJZU6_04845 (dnaE)
DNA replication proteins [BR:
ppil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACJZU6_04845 (dnaE)
DNA repair and recombination proteins [BR:
ppil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACJZU6_04845 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
XLM58924
LinkDB
All DBs
Position
1:982770..986249
Genome browser
AA seq
1159 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKVKPIVKRATELGMPALALTDFTNLCGLVKFYFAAHDA
GMKPIIGADFKVQSQEMGDELFELTILAANNEGYKNLTLLISEAYQRGHVQHQPVIDKEW
LIKHCEGLIILSGGRTGDVGRALLKGNQQLTDTCVAFYQTYFPDNYYLELVRTGRVDEDA
YLHFAIELAEKYDLPVVATNDVRLLTADQFDAHEIRVAIHDGYTMVDPNRPKLYSEQQYL
RSEDEMCELFADIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDMSIEDFLVTKSQQGL
EERLEFLFPDPAVRAQRRPEYDERLEIELKVVNQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDKRDLVIDHVAE
MYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKLIPAEPGMTLEKAFEVEPQ
LGQSYEADEEIRDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPLYCDAEGNNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGMINPRRVEQGLEPVNIAAIPMADKKSFDML
QRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
VSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPSEM
AKQRAVFEQGAIDNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKIISLVDECHRMNLKLLPPDVNKGLYRFNVDDEGAVVYGIGAVKG
VGEGPIENIISAREKDGHFKDLFDFCARIDTKKVNKRVLEKLIKSGALDRLGPNRAAMLA
TLDDAIKAASQYHKAQESGQEDLFGVLTEAPEEVEHAYANIAEAPESVWLEGERETLGLY
LTGHPINAYISELKHYTTWRLKDAQQTGRDKVASVAGLVIAARVMTTKRGSRIGLMTLDD
RSGRMEVMLFTDALDRYIDLLEKDKIVVVSGQVSFDDFNGGLRMSAREVLDISEAREKHL
RGVAISVTEEQIDEQFFSRFSQVLEPHRAGTVPVHMYYQRSNARAKFTLGTEWRVTPADK
LLSDLKMLLGDKQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaccccgttttatccaccttcgagttcatagtgattattcaatgatcgatggc
ttggcgaaagtgaaacctatcgttaagcgcgcgactgaacttggcatgccagcactggct
ttaactgatttcactaacctctgtggtttggtgaagttttattttgctgcccatgatgca
ggtatgaagccgattattggtgctgattttaaagtccaaagccaagaaatgggcgatgag
ctatttgaactcactattttagcggccaataatgaaggttataaaaatctaacattatta
atttcagaagcgtatcagcgtggccatgttcagcatcaacctgtgattgataaagaatgg
ctaattaaacactgtgaagggttaatcattttatccggtggaagaacgggcgatgttgga
cgtgcattactaaaaggcaatcaacagctgacggatacttgtgttgctttttatcaaaca
tattttcctgataattattatttagaattggtgcgaacaggtcgtgttgatgaagatgct
tacctgcatttcgccattgaacttgctgaaaaatatgatttgcctgtggttgctaccaat
gatgtacgattattgaccgctgaccaatttgatgctcatgagattcgcgttgctatccat
gatggttacaccatggtcgatcctaatcgacctaagctttacagtgaacagcaatatttg
cgcagcgaagatgagatgtgcgagttgtttgctgatatccctgaagcactgcaaaactcg
gtagaaatcgccaaacgctgtaatgtgacagtacgtttaggggaatatttcctgccgaat
ttccctactggtgacatgagtatcgaagacttcttggtgactaaatcccaacaaggtctt
gaagagcgacttgaatttctatttcctgatcccgcggttcgcgcccaacgtcgccctgaa
tatgatgaacgcttagaaatcgaattgaaagttgtcaaccaaatgggtttccctggttac
ttcttgatcgtaatggaatttattcagtggtcaaaagataacgatgttcctgtaggtcct
ggtcgagggtcaggtgctggttcattagtggcttacgcgttaaaaatcactgacttggat
ccgctagaatttgacttactgttcgaacgttttcttaaccccgaacgtgtttccatgccc
gatttcgatatcgacttttgtatggataaacgtgatttagtgattgatcacgttgctgaa
atgtatggccgtaatgcggtatcacagatcattactttcggtactatggctgctaaagcg
gttattcgtgatgtgggtcgtgtgcttggtcatccgtatggttttgtcgatcgtctttct
aaattaattccagcagaacctggaatgacgctcgaaaaagcgtttgaagttgagcctcaa
ttaggccaatcgtatgaagcagatgaagaaattcgtgatctgattgatatgtgtcgcatt
ttagaaggtgtaacacgtaacgcaggtaaacacgctggtggtgtggttatttcaccgaca
accatcactgattttgcaccattatattgtgatgcagagggtaataaccccgtcacccaa
tttgataaaaatgatgtagaaaccgcgggcttagtgaagttcgacttcttgggtttacgg
acattaaccatcattgattgggcgttagggatgatcaacccacgtcgtgtcgagcaagga
ttagagccggttaatattgctgcaattcctatggcggataaaaagtcatttgatatgttg
caacgctctgaatcaaccgctgtattccagctcgaatctcgcggtatgaaagatctgatc
aaacgtctacagcctgactgttttgaagatatgatcgccttggtggcacttttccgtccc
ggtccgttacaatcaggcatggtagataactttattgaccgtaagcatggtcgagaagca
gtatcgtacccggatgaaaaatggcaacacgaatcgctaaaagaaattcttgatcctacc
tacggcattattctgtatcaagaacaggtaatgcagatcgcacaggttctagcaggttac
actcttggtggtgccgacatgctacgtcgtgcgatgggtaagaaaaaaccatcggaaatg
gcgaaacagcgtgccgtatttgagcaaggtgctatcgacaacggggttgatggcgaattg
tcgatgaagatctttgacttggtagagaaatttgccggttatggttttaacaaatcacac
tctgctgcttatgcgttagtgtcgtatcaaacattgtggttaaaagcccattacccagcc
gagtttatggccgcggtaatgacggctgatatggataatactgataagatcattagcttg
gttgatgaatgtcaccgcatgaatcttaaattattgccgccagatgtgaataaaggtctg
taccgcttcaatgttgatgatgaaggcgcagtcgtttatggtattggcgcggttaaaggt
gtcggtgaaggcccgattgaaaatattattagtgcccgcgaaaaagacggccactttaaa
gatttatttgatttctgtgcccgtattgacactaaaaaggtcaataagcgtgtgcttgag
aagctgattaaatcgggtgcattggatcgattagggccaaaccgtgctgcaatgttagca
acacttgatgatgcgattaaagcggcgagtcaatatcataaagcgcaagagtcgggtcaa
gaagatctgtttggtgttttaactgaagccccagaagaagttgaacatgcctatgctaat
attgccgaagcgcctgaaagcgtttggcttgaaggtgagcgtgaaacattagggttatac
ttaacaggtcacccaattaatgcttacatctctgaattaaaacattacaccacctggcgt
ttaaaagatgcgcagcaaacaggacgtgataaagtagcgtctgttgcaggacttgtgatc
gctgctcgggtgatgacaaccaagcgtggtagccgtattggtttaatgacattagatgat
cgttcgggtcgtatggaggtgatgttattcaccgatgccctcgatcgttacatagatttg
ctcgaaaaagacaaaatagtggtcgtatctggacaggtcagctttgatgatttcaatggt
ggccttagaatgtcagctcgtgaagtgctcgatatttcagaagcacgagaaaaacatctt
cgtggtgtcgctatttcggtaaccgaagagcaaatcgacgaacaatttttttcccgtttc
agccaagtgttggaaccgcatagagcaggtactgttcctgttcatatgtattatcagcgc
tcgaatgctcgggccaagtttaccttaggaacagagtggcgcgtaacgcctgccgataaa
ttattgtcggatttaaaaatgctcttaggtgataaacaggtcgagcttgagtttaattaa
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