Photobacterium piscicola: ACJZU6_06745
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Entry
ACJZU6_06745 CDS
T11087
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJZU6_06745 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppil03019
]
ACJZU6_06745 (rne)
03009 Ribosome biogenesis [BR:
ppil03009
]
ACJZU6_06745 (rne)
Enzymes [BR:
ppil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACJZU6_06745 (rne)
Messenger RNA biogenesis [BR:
ppil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACJZU6_06745 (rne)
Ribosome biogenesis [BR:
ppil03009
]
Prokaryotic type
rRNA processing factors
ACJZU6_06745 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Extensin_1
Motif
Other DBs
NCBI-ProteinID:
XLM59230
LinkDB
All DBs
Position
1:complement(1377665..1380934)
Genome browser
AA seq
1089 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEVAKDYFPSNYSYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTLELPHGMGLIVRTAGVGKSGEEL
EWDLNVLLNHWNAVKEAAESQAAPFLIHQESNVIARAIRDYLRRDIGEILIDSPQIFERA
RDHIKLIRPDFLSRIKRYEGEVPLFSHYQIESQIDSAFQREVRLPSGGSVVIDPTEALTS
IDINSARATKGGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSL
SILRLIEEEALKDNSSQVLAIVPVPVASYLLNEKRPAVQHIEKYHNVHVVIVPNANMETP
HFEVLRIREGEEQETLSYHLPNAIDALKEAEATEAPQQERSTRKREEPVLHGFAAPKQPA
PVVATPEAQPATKPQTIIAQAPSIFSRIFAAISSFFNNGTEQKTEIKQEVEAPAKEQTNN
NRRNNNNRRPDNRRNDRQGNRDNTRRNGNQESDQDNKAEQQDRNNEQRQSRRRNERTDKN
RQPQAERPVKQPRQPRSEEAKEQQRQSRKEEIQAQKQQRQQANEVKAKATQNVVVEEQVE
AEDKNVVKVKQRRQRRQLQKKIRITDKAAPVVEEQAIVETAAITAPSPLMEMGTTIAKEA
QTTSTQDHAIVNEQSETNEQDNNQRRNRRSPRHLRASGQRRRRIRDTRSEKQDYEQHEDP
SCYNVADAVEHAVVEATDTISDMVNVVSIVEKPKAPRQTSGVATPEMAMGKVWSRIKPTI
EAPVAAVETVVETNDDLIIANHSAIAKALPEVESKPALGGVAMPELAMGKAFPLRAASVV
EAPVVEAPVVEAPVVEAPVVEAPVVEAPVVEAPVVEAPVVEAPVVEAPVVNTASAPMTKI
VTEAVAVTATSPRGFHAVAAMTKAPAPVETTVKVHVEAAPLRELATTRSAGSQTATNSAA
APMTKPSFD
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagaaggaagagttgcgcgtcgcattagttgat
ggccaaaagctatttgatcttgatatcgaaagccctggtcacgaatctaaaaaagcaaat
atctacaaaggccgcatcacgcgtatcgaaccaagcctggaagctgcgttcgttgattac
ggtgcagaacgccatggcttcctccctttaaaagaagtcgctaaagattacttcccatca
aactattcttaccaaggtcgtcctaacattaaggaagtcttgaaagaaggccaagaagtt
atcgttcaagttgataaagaagagcgtggcaacaaaggtgccgcacttacaacctttatc
tcattagcgggtagttacttggtgttaatgcctaataaccctcgtgctggcggtatttct
cgtcgtattgaaggtgaagagcgtacacaacttaaagctgcattaagcacattagaactg
cctcacggtatgggtctaattgttcgtactgcaggtgtaggtaaatcaggtgaagagctt
gagtgggatttaaatgttcttcttaatcactggaatgcagtgaaagaagccgctgaatct
caagctgctccattcttgatccaccaagaaagtaatgttattgctcgtgctattcgagat
tatctacgtcgtgatatcggtgaaattcttatcgatagcccacaaatttttgaacgtgca
cgcgatcatattaaattaattcgccctgatttcttatcgcgtattaagcgttatgaaggt
gaagttccactatttagtcactaccaaattgaaagtcaaattgactctgcgttccagcgt
gaagttcgtttaccttcaggtggctcagttgttattgacccaacagaagcactaacatct
attgatatcaactccgctcgtgcaacaaaaggcggcgatatcgaagaaacagcattacaa
actaacctagaagccgctgatgaaattgctcgtcaattacgtctacgcgatcttggtggt
cttgtggttatcgacttcattgatatgacgccagttcgtcaccaacgtgaagtagaaaac
cgtttacgtgaagctgttcgtgttgaccgagcgcgtgtacaaattggtcgtatatctcgc
tttggtttgctagaaatgtcacgccaacgtttaagcccatctttagctgaagcaagccat
cacgtttgtccacgttgtactggtacgggtgttgttcgtgataatgaatcactatcactt
tctatcttgcgtttaatcgaagaagaagcattaaaagataacagttcacaagtacttgca
attgtaccagtgcctgttgcttcttacctattgaacgaaaagcgtcctgcggtacagcac
attgagaaatatcacaatgtgcatgttgttatcgtgccaaacgccaacatggaaacgcca
cactttgaagtgttacgtattcgtgaaggtgaagagcaagagacactttcataccatctt
cctaatgcgattgatgcactgaaagaagcagaagcgactgaagctcctcaacaagagcgc
agtacaagaaaacgtgaagaacctgttctacacggctttgcagcaccaaaacaaccagcg
ccagtggtagcgacaccagaagcacaaccggcaactaaaccacaaacgattattgctcaa
gcgcctagtatctttagccgcatttttgctgcaatttcttcattcttcaataacggtact
gagcagaaaaccgagattaagcaagaagtagaagcaccagcaaaagaacaaacaaataat
aatcgtcgtaacaacaataatcgtcgtcctgataaccgtcgtaatgaccgtcaaggtaac
cgtgacaacactcgccgtaatggcaatcaagagagtgatcaagacaacaaagctgaacag
caagatcgcaacaacgagcagcgtcaatctcgtcgtcgcaatgagcgcacggacaaaaac
cgtcagcctcaagccgaacgtccagttaagcaaccgcgtcaacctcgttctgaagaagcg
aaagagcagcaacgccagtctcgtaaagaagagattcaagcgcagaagcaacaacgccaa
caagcaaacgaagttaaagcaaaagcgactcaaaacgttgtcgttgaagagcaagtggaa
gccgaagacaaaaatgttgttaaggtaaaacagcgtcgtcaacgtcgtcagttacagaag
aaaattcgtattactgacaaagcagcaccggttgttgaagaacaagctattgttgaaact
gcagcgatcactgccccatcaccattaatggaaatgggtacaacgattgctaaagaagcg
caaacaacgtcgactcaagatcacgctattgttaatgagcaatcagaaacaaatgagcaa
gacaacaatcaacgtcgtaaccgtcgttcaccacgtcatctacgcgctagcggtcaacgc
cgtcgtcgtattcgtgatacacgtagtgaaaaacaagattacgagcagcatgaagatcca
agctgttacaacgttgcagatgccgttgaacacgccgttgttgaagcaacagacactatt
agcgatatggtaaatgttgtttctattgttgagaaaccaaaagcaccccgtcaaacatca
ggtgtagcaacaccagaaatggcaatgggcaaagtatggtctcgcattaagccaacaatt
gaagctcctgtagctgcggttgaaactgttgttgaaactaacgatgatcttatcattgct
aatcattcagcaatcgcgaaagcattacctgaagttgaatcaaaacctgctttaggcggt
gttgcgatgcctgaacttgcaatgggtaaagcattcccattacgtgcagcgtcagttgtt
gaagcaccagttgttgaagcaccagtcgttgaagcaccagttgttgaagcaccagtcgtt
gaagcgccagtcgttgaagcgcctgttgttgaagcacctgttgttgaagcgcctgttgtt
gaagcacctgtcgttgaagcgccagttgttaacacagcatcagcaccaatgacgaaaatc
gttactgaagctgtcgcggttacggcaacatctccacgtggtttccatgcggtagcagca
atgactaaagcgccagcacctgttgaaacaacagtaaaagtgcatgttgaagcggcacca
ctacgtgagcttgcaacaacacgctctgcgggtagccaaacagcaactaactcagcagca
gcaccaatgactaagccatcttttgactaa
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