Photobacterium piscicola: ACJZU6_08595
Help
Entry
ACJZU6_08595 CDS
T11087
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJZU6_08595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppil03019
]
ACJZU6_08595
Enzymes [BR:
ppil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACJZU6_08595
Messenger RNA biogenesis [BR:
ppil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACJZU6_08595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
XLM57048
LinkDB
All DBs
Position
1:1801220..1802500
Genome browser
AA seq
426 aa
AA seq
DB search
MSFETLGLHPKLLQVVAELGYEKPTDVQLQAIPLALAGDDVMAGAQTGTGKTAAFALPIL
QRLMTLPSLTEMGAEEIKPQQGAKIRALVITPTRELAQQVYDSFIAYSKYSDLKVAVAYG
GTSMNVQIKALRAGVDILIATPGRLLDHVFVGNVSLANVETFVLDEADRMLDMGFIIDIN
RIMKRMPAERQTLFFSATFSKQVKKLAFSILTDPKMVEVTPDNIAADTVQQMVYPVDKKR
KSELLAYLIGSRNWQQVLVFTKTKQGSDQLAKSLGLDGIKAVSINGDKSQGARQRALDDF
KAGKVRVLVATDVAARGLDIQQLEYVVNFDLPFNAEDYVHRIGRTGRAGNTGHAITLMSL
DEEWALKAIEELLNTRLPQQWLEGYEPDPSLIETVSVHRGASAEKRRAKAKSKVHQNRGK
NTQRRR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgaaacccttggccttcaccctaaattactgcaagttgtcgcagaattaggt
tatgaaaaaccaacggatgtgcaattacaagccattccattagcgctagcaggggatgat
gtaatggctggggctcaaacgggtaccggtaaaacagccgcatttgcacttcctatttta
cagcgtttaatgacattgccgtcattgactgaaatgggcgctgaagaaataaagcctcaa
caaggtgcaaaaattcgtgcgttggtgattacaccgacacgtgaattagcacaacaagtt
tacgatagctttattgcgtacagtaagtacagtgatttgaaagtcgcggttgcttatggc
ggcactagtatgaatgtgcaaattaaagcattaagagcaggtgttgatattcttatcgcg
acacctggacgtttacttgaccatgtttttgttggtaatgtatcacttgcgaatgtagaa
acatttgtacttgatgaagctgatcgcatgcttgatatgggttttattattgatattaac
cgtatcatgaagcgtatgccggctgagcgtcagactttattcttctctgcaaccttttca
aagcaagttaaaaaattagcttttagtattttaactgaccctaagatggtggaagtgaca
ccggataatattgcagcagatactgtgcagcaaatggtgtatcccgttgacaaaaagaga
aaatcagaattattggcatatctgattggttcacgtaattggcaacaagtattagtcttt
actaaaacgaagcaaggctcagatcaattagctaaaagtttaggtttagatggtattaaa
gcggtgtctattaatggtgataaaagtcaaggcgcgcgtcaacgtgcgcttgatgatttt
aaagccggtaaggtacgtgtgcttgttgcaacagatgttgctgctcgtggattagacatt
cagcagttagaatatgttgttaactttgatttaccgtttaatgctgaagattatgtacac
cgcattggtcgtacagggcgtgctggtaatactggccacgcgatcacgctaatgagttta
gatgaagagtgggcattaaaagcgattgaagagctattaaatacccgtttaccacaacaa
tggcttgaaggttatgaacctgatcctagcttaattgaaacagtctctgttcatcgcgga
gcatctgctgaaaaacgtcgggccaaagcaaaaagtaaggtacatcaaaaccgtgggaaa
aacacccaacgccgtcgttaa
DBGET
integrated database retrieval system
