Photobacterium piscicola: ACJZU6_10660
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Entry
ACJZU6_10660 CDS
T11087
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACJZU6_10660 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppil03400
]
ACJZU6_10660 (mfd)
Enzymes [BR:
ppil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACJZU6_10660 (mfd)
DNA repair and recombination proteins [BR:
ppil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACJZU6_10660 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XLM57429
LinkDB
All DBs
Position
1:2237358..2240816
Genome browser
AA seq
1152 aa
AA seq
DB search
MTNKTLLSIPLPKKSGDNRYIGNLSGSALALSLAEIATKYNGPILAVVADTQTALKLQPE
ISQFCDLDVHVFPDWETLPYDNFSPHQDIISERLARLYKMPTQKNGIILVPISTLLQRLT
PKEFIHQHALIVKKDDRISLEKLRLQLEASGYRHVDQVMEHGEYASRGSLVDLFPMGSNA
PYRIDFFDDEVDSIRQFDPENQRSTAEINTIDLLPAHEFPTDELAIENFRMRWRERFEAR
REPESIYQQVSKKIWPTGIEYWQPLFFNHTDTLFDYLPTNALLVTLGDLEPAVDTFLHDA
EYRYDQRRVDPLRPLLAPKELWLTKDEMFAGFKQLPRVRIQREVIDADKAGRYNPALTPV
PAITINHQLKEPLAELRHFTEQFKGKIIFSVASEGRREALFDLLARIKLRPTVFDNLDAA
MADKAKHCLVIGAAENGFILEKPAVAFICESDLLGERIQQRRRNDKKTTVNADTIIRNLA
ELQVGQPVVHIDHGIGRYQGLQTLEAGGIQTEYVTLEYQGGAKLYVPVASLHLISRYSGG
AEETAPIHKLGGEAWVKARRKAAEKVRDVAAELLEVYAMRELKPGFKFKLDRESYADFCT
SFPYEETYDQALAINAVLSDMCQPKAMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTIL
VPTTLLAQQHFENFRDRFANTPVRVEVLSRFKTAKEQKQILADVEEGKIDILIGTHKLLN
SSVNYHDLGLLVVDEEHRFGVRQKEKIKAIRADVDILTLTATPIPRTLNMAMSGMRDLSI
IATPPARRLAIKTFVRQSDENIIREAILREISRGGQVYFLHNEVDSIEQTTEDLAKLIPE
ARVTFAHGQMRERELERIMSDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQ
LHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAIASLEDLGAGFTLATHDLEIRGA
GELLGDEQSGQIQSVGFSLFMEMLEQAVESLREGREPTLDDLLKQQAEVEMRIPALLPDE
YIPDINTRLSLYKRIASAKDDNELNEIKVELIDRFGLLPDAAINLITVNSLKLKAAIIGV
KKVESNEKGGYLEFKQDAAINPHFLVGLLQTQPQHFRMEGPTKLKIVSNETDRKKRVKFI
EDLLNQFRENMI
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgacgaataaaacattactctcaatccccttaccaaaaaaatctggggataatcgttac
atcggtaatttatctggttctgcgttggcattgtcattagcagaaatagccactaaatat
aatggtcctatacttgccgttgttgcagatacgcaaactgcgttaaaactacagccagag
atcagccaattttgtgatcttgacgtccatgttttccctgattgggaaacattaccttat
gataatttctctccacatcaagatattatctctgagcgcttagctcgcttatataaaatg
ccaacacaaaaaaatggtattatcttagtccctatcagcacacttttgcagcgattaaca
cctaaagaattcattcaccaacatgcgttaatcgttaaaaaagacgatcgtatctcactt
gaaaaactgcgattacaactagaagcatcaggttatcgtcacgttgatcaagtgatggag
cacggtgaatatgctagccgtggttcattggttgatctgttcccaatgggcagtaacgca
ccataccgcattgatttctttgatgatgaagtagactctattcgtcaatttgatcctgaa
aatcaacgctcaacagctgaaatcaataccatagatctactaccagcgcatgagttccca
accgatgagctagcaatagaaaacttccgtatgcgatggcgcgaacgttttgaagcgcgt
cgagagcctgaatctatctatcagcaggttagtaaaaaaatatggccaactggtatcgaa
tattggcagccactattttttaatcataccgatactctgtttgattatttaccaaccaat
gcgctattagtgacactcggtgatttagagcctgcggtcgacactttcttacatgatgca
gagtatcgatatgaccaacgtcgcgttgatccgctacgacctttacttgcgcctaaagaa
ttatggctaactaaagatgaaatgtttgctggctttaagcaactgcctcgtgtacgtata
caacgtgaagtaattgatgcagacaaagcaggtcgctataacccagctttaacccccgtc
ccagctataacaattaatcatcaactcaaagagccgttagctgagttacgtcactttact
gagcaatttaaagggaaaatcattttctctgtcgcctcggaaggtcgtcgagaagcatta
tttgatctattagcgcgcataaaactacgtccaaccgtttttgataaccttgatgctgca
atggcggataaagctaaacattgtctcgttattggtgctgctgaaaatggttttattctt
gaaaagccagcggtcgcgtttatttgtgaaagcgatttacttggcgagcgtattcaacag
cgccgtcgtaatgataaaaaaaccacagttaatgctgataccatcattcgtaaccttgct
gaattacaggtaggacaacccgtagttcatatcgaccatggtattggtcgttatcaagga
cttcaaactcttgaagctggtgggattcaaaccgaatatgtcactcttgaatatcaaggt
ggtgctaagctttatgtcccagtggcttcattgcaccttattagccgttactccggcggc
gcagaagaaacagcgcccattcataaattaggcggtgaagcgtgggttaaggcacggcga
aaagcggcagaaaaagtgcgtgatgttgccgccgagttacttgaagtttatgctatgcgt
gagctcaaaccgggctttaaattcaagcttgatcgcgaaagctatgctgatttctgcacc
agtttcccatacgaagaaacttatgatcaggcattagccattaatgctgttctatctgac
atgtgccaaccaaaagccatggatcgcttggtttgtggtgatgtcggttttggtaaaaca
gaagtcgcaatgcgagccgcttttgttgcagtagataacaacaaacaagttactatctta
gtaccaacaacattattggcacagcagcatttcgaaaatttccgagaccgttttgccaat
acgcccgttcgcgttgaagtattatcgcgctttaaaacagccaaagaacaaaaacaaatt
ctagctgatgttgaagaaggtaagattgatattcttattggtactcacaaactgctcaat
agcagcgttaattaccatgatctcggactattggttgtggatgaagaacaccgctttggt
gttcgtcaaaaagaaaagatcaaagctattcgtgctgatgttgatattttaacactaacc
gcaaccccaattcctcgaacactgaatatggcgatgagcggcatgcgagacttatcaatt
attgccacaccacctgcacgtcgcttagcgattaaaacgtttgtacgtcaaagtgatgaa
aatattattcgcgaagccatcttgcgtgagattagccgtggtggacaagtgtatttcttg
cataacgaagtcgatagtattgaacaaaccacagaagatttagccaaattaattccagaa
gcacgagtaacatttgctcacggccaaatgcgcgaacgtgaactggaaagaatcatgagt
gatttttaccatcaacgctttaatgtactcgtttgtaccaccattattgaaaccggaatt
gacgtccccacagccaatactattatcatggatcgtgcagataatcttggcctagcacaa
ctacaccaattgcgtgggcgtgtcggtcgttctcaccaccaagcatatgcttaccttcta
acaccacatccaaagcgtatgaccaaagatgcggtgaaacgtttagaagccattgcatca
ctagaagatcttggtgcaggctttacgcttgccacccatgatttagaaattcggggcgca
ggtgaactattaggtgatgagcaaagtggtcaaattcaatctgttggttttagcctcttt
atggaaatgctagaacaagcagtagagtcattgcgcgaaggtagagagccgacactcgat
gatctactcaaacaacaagctgaagttgaaatgcgtattccagcattactacctgatgag
tatattccggacattaatacccgtttatcactttataaacgtattgctagtgcaaaagat
gataatgagcttaatgaaattaaagtagagttaattgatcgatttggtcttttacctgat
gctgctatcaacctaattaccgttaatagccttaaacttaaagccgctattattggtgtt
aagaaagttgagagtaatgaaaaagggggctatcttgaatttaaacaagatgcagccatt
aaccctcactttctggttggtttactgcaaacacagcctcagcatttcagaatggaagga
ccaacaaagttaaaaatcgtatcaaatgaaacagatcgtaaaaagagagttaaatttatt
gaagatctactaaatcagtttagagaaaatatgatttaa
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