Photobacterium piscicola: ACJZU6_13550
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Entry
ACJZU6_13550 CDS
T11087
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJZU6_13550 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppil03019
]
ACJZU6_13550 (pnp)
03016 Transfer RNA biogenesis [BR:
ppil03016
]
ACJZU6_13550 (pnp)
Enzymes [BR:
ppil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ACJZU6_13550 (pnp)
Messenger RNA biogenesis [BR:
ppil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACJZU6_13550 (pnp)
Transfer RNA biogenesis [BR:
ppil03016
]
Prokaryotic type
tRNA degradation factors
ACJZU6_13550 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
S1_2
S1_RRP5
aRib
KH_SLS1_2
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
XLM57962
LinkDB
All DBs
Position
1:complement(2865765..2867888)
Genome browser
AA seq
707 aa
AA seq
DB search
MNPIVKTFQYGNHTVTLETGVIARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTV
NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVN
PAVNPDMVTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNEELEASRLDLVVAG
TKDAVLMVESEADRLSEEQMLQAVVFGHDQQQVVINAINEFAAEVATPAWDWAAPAENTA
LKTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNDAILAEDVDANAKEIHTIFHDLE
KTVVRGRIIAGLPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRD
AQIIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEF
PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMEIALNQAKGARKHILSVMDNAI
NAPREDISQFAPRIHMMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAATE
GTAAQEAIRRIEEITADVEVGRVYTGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEK
VSDYLQMGQEVQVKVLEIDRQGRIRLSMKEAVEAPAAAPAQDEQPQG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctatcgtaaagactttccagtacggtaaccacacggttactctagagactggt
gttatagcacgtcaagcgactgctgcagtaatggttagcatggacgacacttcagtgttc
gtttctgttgttggtaagaaaacagcagtagaaggccaagacttcttcccgctaacagta
aactaccaagagcgtacttacgctgcaggtaaaatccctggtggtttcttcaagcgtgaa
ggccgtccttctgaaggcgaaacactgactgcacgtctaatcgaccgtccaatccgtccg
ctattccctgacgatttcaaaaacgaagtacaagttattgcaacagtagtttctgtaaac
cctgctgttaaccctgatatggttacaatgattggtacttctgcagcacttgctatttct
ggtattccattcaatggtcctatcggtgcggcacgtgttggttacattaacgatcaattc
gttcttaacccaagcaatgaagagctagaagcaagccgtctagatcttgttgttgctggt
actaaagacgcagtgctaatggttgaatcagaagctgatcgtctatctgaagagcaaatg
ctacaagcagttgttttcggtcacgatcaacaacaagttgttatcaatgcaatcaatgag
tttgctgctgaagttgcaactcctgcttgggattgggctgcacctgctgagaacacagcg
cttaaaactaagatcgctgagttagctgaagctaagctggttgaagcttaccaaatcact
gaaaaaatggcgcgttacgatcgcatccacgagattgctgctgaagtaaacgacgcgatt
cttgctgaagatgttgatgcaaacgcaaaagaaatccacactatcttccacgatctagag
aagacagttgtacgtggccgcatcattgctggtcttccacgtatcgatggtcgtgaaaaa
gacatggttcgtgcgctagacgtacgtactggtgtacttccacgtacgcacggttcttca
ctatttactcgtggtgaaacacaagcacttgttacggcaacgcttggtacacaacgtgat
gcacaaatcattgatagcatcatgggtgagaagaaagatcacttccttcttcactacaac
ttccctccatactgtgtaggtgaaactggtttcgttggttcgcctaagcgtcgtgaaatt
ggtcacggtaagttggcgaagcgtggtattgctgcagtaatgccatctgttgacgaattc
ccatacacagtacgtgtagtatcagaaatcactgaatctaacggttcatcttcaatggct
tctgtatgtggtacttcactagcacttatggatgctggtgtgccaatcaaatcatctgtt
gcgggtatcgcaatgggtcttgtgaaagaaggcgatgatttcgttgttctttctgacatc
cttggtgacgaagatcacctaggtgacatggactttaaagttgcgggtactgacgacggt
atcacagcacttcagatggatatcaagatcgaaggtatcactaaagagatcatggaaatt
gcacttaaccaagctaaaggcgcgcgtaagcacatccttagcgtaatggataatgcaatc
aatgctcctcgtgaagatatctctcagtttgctcctcgcattcacatgatgaagatcaac
cctgagaagatcaaagatgttatcggtaaaggtggtgcagttattcgtgcacttactgaa
gaaactggtactactatcgaaatcgaagatgatggtacagtgaagattgcggcgactgaa
ggtactgctgcacaagaagcaatccgtcgtatcgaagaaatcacagctgatgttgaagtt
ggccgtgtttacactggtaaagtaatgcgtatcgttgatttcggtgcgtttgtatcagtt
atcggtactaaagaaggtctagttcacatctctcaaatctcacaagatcgtgtagagaaa
gtgtctgattacctacagatgggtcaagaagttcaagttaaagtacttgaaatcgaccgt
caaggccgtatccgtctaagcatgaaagaagcagtagaagcgccagccgcagctcctgca
caagacgaacagccacaaggctaa
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