Photobacterium piscicola: ACJZU6_14330
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Entry
ACJZU6_14330 CDS
T11087
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppil Photobacterium piscicola
Pathway
ppil02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACJZU6_14330 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppil03021
]
ACJZU6_14330 (rpoD)
Transcription machinery [BR:
ppil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACJZU6_14330 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
Motif
Other DBs
NCBI-ProteinID:
XLM58100
LinkDB
All DBs
Position
1:3062016..3063875
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AA seq
619 aa
AA seq
DB search
MEQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPEDIVDSDQVEDIIQMINDMGIKVVETAP
DADELMMTEDNADEDAIEAAAQALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPSAIAHLLEQFDKVEADELRLTDIISGFVDPNEEATAAPTATH
IGSELSETDLADEDKDLEDGDDDDDEDGAEEEEDDGSIDPELAREKFLELRQSYEKMALA
INTNGRQHATTEVAVEELSEIFKQFRLIPKQFDRLVSSLRDSMDKVRTNERLIMRMCVDN
SKMPKKTFISLFAGNESNSDWIDTALNSGKPYAERLKNYEEDLRRSTLKLRILEQETGLS
IERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM
GREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDA
ATATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDVLRSFLDE
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaatccgcagtcacagctaaagttacttgttgctaaaggcaaggaacaaggc
tatctgacctacgccgaagtaaatgaccacctaccagaagatattgttgattctgatcag
gttgaagacattattcaaatgattaatgacatgggtatcaaggtagttgaaactgcccct
gatgccgatgaactcatgatgactgaagataatgccgacgaagacgccattgaagcagcg
gcgcaagcattatcaagcgtagaaagcgagatcggtcgcacaacagacccagtacgcatg
tacatgcgtgaaatgggcacggttgaactacttactcgcgaaggcgaaattgatatcgca
aaacgcattgaagatggtattaaccaagttcaatgctctgttgctgaatacccttcagca
atcgctcatttacttgagcagtttgacaaagttgaagccgatgaacttcgtctaactgat
atcatttcaggctttgttgatccaaacgaagaagctactgcagcgccaacagcaacacac
attggctcagaattaagcgaaaccgatcttgcagatgaagataaagatcttgaagacggt
gacgatgacgatgacgaagatggcgctgaagaagaagaagacgatggcagcatcgaccca
gaattggcgcgtgaaaagttcttagaacttcgccaatcttatgaaaaaatggctttagcc
attaacactaatggtcgtcagcacgcgacaactgaagttgccgttgaagaattgtcagaa
atcttcaagcaattccgtctgattccaaagcaatttgatcgtctagttagctcactacgt
gactcaatggataaagtacgcactaatgagcgtcttatcatgcgtatgtgtgttgataac
agcaaaatgccaaagaaaacgttcattagcttatttgcaggcaatgaatcaaacagtgat
tggatcgacactgcacttaactcaggtaagccttacgctgaacgtttaaagaattatgaa
gaagatcttcgtcgttcaacgttaaagctacgcattcttgagcaagaaacaggtctttca
atcgaacgtattaaagacatcagccgtcgtatgtctatcggtgaagcaaaagcgcgccgt
gcgaaaaaagagatggttgaagctaacttacgtctggttatttctatcgcgaagaagtac
accaaccgtggtttgcagttcttggatctaatccaagaaggtaacattggtctaatgaaa
gcggttgataaatttgaataccgtcgtggttacaaattctcaacttacgcaacatggtgg
atccgtcaggcaatcacacgttcaatcgcagaccaggcacgtactattcgtatccctgtg
cacatgattgaaaccatcaacaaattgaatcgcatctcacgtcagatgctacaagagatg
ggccgtgagccattacctgaagaattggctgaacgcatgcaaatgccggaagacaaaatc
cgcaaggtactgaaaattgcgaaagagccaatctcaatggaaacccctatcggtgatgat
gaagattcacacctaggtgatttcattgaagatacaacacttcaacttccaatggatgca
gcaacagcaactaacttgcgtgccgcaactaacgacgtacttgctgggctaacgcctcgt
gaagcaaaagtacttcgtatgcgttttggtatcgatatgaataccgaccacacgctagaa
gaagtgggtaagcaatttgatgttactcgtgagcgtattcgtcagattgaagcaaaggca
ctacgtaaattacgtcacccaagccgttcagatgtgcttcgtagtttccttgatgaataa
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