Photobacterium piscicola: ACJZU6_14415
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Entry
ACJZU6_14415 CDS
T11087
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ppil Photobacterium piscicola
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppil03021
]
ACJZU6_14415 (rapA)
Transcription machinery [BR:
ppil03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
ACJZU6_14415 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Motif
Other DBs
NCBI-ProteinID:
XLM58115
LinkDB
All DBs
Position
1:3084743..3087664
Genome browser
AA seq
973 aa
AA seq
DB search
MPFALGQRWISDTESDLGLGTVVAIEPRTVSLMFPASDENRLYARHDAPVTRVMFNVGDV
IESHEGWSLKVEAIEEDKGIITYIGTRIDTEESDVALREIFLSHQIRFNKPQDKLFAGQI
DRMDRFALRYRALKNQYEQLKSPLRGLCGMRAGLIPHQLYIAHEVGRRYAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERILILVPETLQHQWLVEMMRRFNLHFSIFDEERCVESLA
DAANPFDTAQYVLCSLDFLRKSRRRFEQALDADWDLLIVDEAHHLEWSEERPSRQYQVVE
AIAEKTPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYEAFVEEERQYEPVADAVSKLL
AGEKLDSNAKQTLVDLLAGQNVEPMITAIENATTADDAKALEARHELIRNLMDRHGTGRV
LFRNTRSAIKGFPKRHLNMYPLPMPNQYSTAMRVAGMMAGKLSINEKAIKLLYPEDIYQE
FEGESATWWNFDPRINWLLDMLKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHE
GMSIIERDKAAAYFAQEESGAQVLICSEIGSEGRNFQFANQLVMFDLPSNPDLLEQRIGR
LDRIGQQREIEIHVPHLEGTSQALLARWFNEGLNAFEETCPTGRPVYEAVCEDLITLLAS
DKQDSDALEAVITQSAALHNELKGKLEQGRDRLLEIHSNGGEAAQQLVEQISSKDGDTNL
VSFALGLFDTIGLNQDDKGENAIVVTPSEHMMVASYPGLPYDGCTITFDRNTALSREDLH
FISWEHPMIQGGIELLLSEGVGTTAVSLLKNKALPVGTLLLELIYVVDAQAPKQSGIGRF
LPKTPIRILLDSKGNNLSANVEFESFNRQLSPINRHLGSKLVNSVQKEIHTLIAHAEREI
DKELVTVRSQAQAEMEATLRAEHQRLLALKAVNPNIRDDELELIESQILDLTDYIAKAQI
QLDSLRLIVVSHN
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgccatttgctttgggtcaacgttggatcagtgatacagaaagtgatttaggtttggga
acagtcgtcgcgattgagcctcgcactgttagcttgatgtttccagcatcagatgaaaac
cgtttatacgctcgacatgatgcaccagttacccgtgtaatgtttaatgttggcgatgtg
attgaaagccacgaaggctggtcgctcaaagttgaagcgatcgaagaagataaaggaatt
atcacttatatcggtacccgtatagataccgaagaaagcgatgtcgcgttacgtgaaata
tttttaagccatcaaattcgttttaataaaccgcaagataaattatttgcaggtcaaatt
gatcgtatggatcgatttgcattacgttaccgcgcgctaaaaaatcaatatgaacaacta
aaaagcccattgcgtggtttatgtggcatgcgtgcaggtttgattccgcaccagctttat
atcgctcatgaagtcggtcgtcgttatgcaccacgcgtacttttagccgatgaagtaggt
ttaggtaaaaccattgaagcgggcatgatcattcaccaacaagtgctatctggccgtgct
gaacgtattctgattttggtacccgaaacgctacagcaccaatggcttgtagaaatgatg
cgtcgctttaaccttcatttttctatttttgatgaagagcgttgtgttgagtctttagcg
gatgcggctaacccatttgataccgcacaatacgtactgtgttcacttgatttcctacgc
aaaagccgccgtcgatttgaacaagcattagatgccgattgggatctattaattgttgat
gaagcgcatcaccttgaatggagtgaagagcgtccaagccgtcaataccaagtggttgaa
gctattgctgaaaaaacacctggcgtattactgctaacggcaacccctgaacaattaggc
cgtgaaagtcactttgcccgcctacgcttattagaccctgatcgtttttacgattacgaa
gccttcgtcgaagaagaacgtcaatatgaaccagttgctgacgccgtatcaaagttactt
gctggtgaaaaacttgatagcaacgctaagcagactctagttgatttacttgcaggccaa
aacgttgagccaatgatcacggcgattgaaaatgcaaccacagcagatgatgcaaaagcg
cttgaagcacgtcacgaattaatccgtaatctcatggatcgtcacggtactggccgcgta
ttattccgtaacacccgttcagcaatcaaaggtttccctaagcgtcacctcaatatgtac
ccattaccaatgccaaatcagtacagcaccgcgatgcgtgtagctggcatgatggcaggt
aaactaagcattaacgaaaaagcgattaaactgctttatcctgaagatatctatcaagag
tttgaaggtgaatcagcgacatggtggaactttgaccctcgcattaactggttgttagat
atgctaaaagccaaccgtaatgagaaagtactggtgatctgttctcgtgctcaaaccgca
ttaacgttagagcaagccctacgtgagcgtgagggtattcgtgcgaccgtgttccacgaa
ggcatgtcgatcattgaacgtgataaagcggcggcgtattttgcgcaagaagagagtggc
gctcaggtattaatctgttcagagattggttcagaaggtcgtaacttccaatttgctaat
caattagtaatgttcgatttaccaagtaaccctgacttgttagagcaacgtattggtcgt
ttagatcgtatcggtcagcaacgtgaaattgaaatccacgtaccgcaccttgaaggcacc
tcacaagccttattagcacgttggtttaatgagggcttaaacgcgtttgaagaaacctgc
ccaacgggtcgtcctgtctatgaagcggtatgtgaagatttaatcacactacttgctagt
gataagcaagacagtgacgcactggaagcggtgatcactcaaagtgcggcactacataac
gaacttaaaggtaaacttgaacaaggccgtgaccgcttacttgaaatccactccaatggt
ggcgaagccgcacaacagttagtggaacaaattagcagcaaagatggtgataccaacttg
gtctcttttgcactgggcttatttgataccattggtcttaaccaagacgacaagggtgaa
aacgcaattgtggtaacaccgtcagagcacatgatggttgcaagctaccctggcttacct
tacgacggttgtaccatcacctttgatcgtaatactgcgctatcacgcgaagatctgcat
tttatcagctgggaacacccaatgattcaaggtggcattgaattgctattgagtgaaggt
gtcggaacaacggcagtttcattactgaaaaacaaagcactgcctgtcggtactttatta
ttagaactgatttacgtggttgatgcgcaagcaccaaaacaatcgggtattggtcgtttc
ttacctaaaacacctattcgcattctacttgatagcaaaggtaataatctgtctgccaat
gttgagtttgaaagctttaaccgtcagttaagcccaattaaccgtcatttaggcagcaag
ttagtcaactcagtacaaaaagaaatccatactcttattgctcatgctgaacgtgaaatt
gacaaagagttagttaccgtacgtagccaagcacaagccgagatggaagcaacattacgt
gctgagcatcaacgtttactggcactaaaagcagttaaccctaacattcgtgatgacgag
ttagaattgattgaatctcaaattttggatttaacagactacattgctaaggctcaaatt
caactggattcactgcgtttaattgttgttagccataactaa
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