Photobacterium piscicola: ACJZU6_15255
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Entry
ACJZU6_15255 CDS
T11087
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJZU6_15255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppil03019
]
ACJZU6_15255
03400 DNA repair and recombination proteins [BR:
ppil03400
]
ACJZU6_15255
Enzymes [BR:
ppil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACJZU6_15255
Messenger RNA biogenesis [BR:
ppil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACJZU6_15255
DNA repair and recombination proteins [BR:
ppil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACJZU6_15255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
HTH_64
Motif
Other DBs
NCBI-ProteinID:
XLM60163
LinkDB
All DBs
Position
2:126104..128029
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AA seq
641 aa
AA seq
DB search
MYHQTLKKYFGFDSLRLGQEEVITRVLSGHSAAAIFPTGSGKSLCYQLPAIELPHLTLVI
SPLLALMKDQLDFLATKGIPAASIDSSQTWQQTQQVMQQIRQGEIKVLMISVERLKNERF
RHFIGQIPISLLVVDEAHCISEWGHNFRPDYLKLPHYQQALNIPQVLLLTATATPAVIQD
MQDKFAIAKDNIIVTGFYRNNLDLTVLAADEDEKIDTLKHQLSQRNNEPSIVYVTLQHTA
EQVADALTRSHFPAQAYHAGMDSDRRHSIQQQFMNGEINCIVATIAFGMGIDKSNIRQVI
HFDLPKSIENYSQEIGRAGRDGEVSQCTVIANKSGLNVLENFVFGDTPDRSAIAYILREI
QAQDQQWEIMSGRLSKDSNIRLLPLKTLLVYLEIRQIIEPMFTYFADYRYKMNISQYEIA
QRFQGERRQFIETIFACSPKARVWHTLDMDALWQGYQVDRKRVVAAIDYLNEQGWITLES
KQMTDVYRINQHHFDIEVETEALYQLFQQKEHSEINRIENMIAFFESKSCLSHKLASYFA
DHHAPKQCGHCSVCRGKTITLPALPTLPEITDQQITMWADSFIQRNDSAPSMAAITRFLH
GMSTPLNSKIKAKQLEGFGVLEAYPFQQTFDHICRLYHGNC
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaccaaacacttaaaaaatattttggctttgattctttacgtttagggcaagaa
gaagtaattacccgcgttcttagtggtcattcagctgctgctatatttccaacgggatct
ggaaaatcattatgttatcaattacccgcgattgaattaccccatcttacgttagtcatt
tcaccattattagccttaatgaaagatcaacttgattttttagctacgaaagggattcct
gccgcatctattgattccagccaaacatggcaacaaactcagcaagtcatgcaacaaatt
cgtcaaggcgaaattaaagtattaatgatttcagtagaacgtctcaaaaacgaacgcttt
cgtcactttattggtcaaattccaatttcattattagtcgtcgatgaagcacactgtatt
tcagaatggggccacaatttccgtcccgactacctgaaattgccacactaccaacaggcc
ttaaacattcctcaagtgttattacttactgcaacagcaacccctgccgtaattcaagat
atgcaggacaaatttgccattgctaaagataatattattgtgacgggtttttaccgaaat
aaccttgatttaaccgtattagcggcagacgaagacgagaaaatagatacccttaaacat
caactttctcaacgtaataatgaaccttctattgtctatgtcaccttacaacacacagca
gagcaagtggctgatgcgcttactcgtagtcactttccagcccaagcctaccatgcggga
atggattcagatcgccgccatagcattcaacaacaatttatgaatggggaaattaattgt
attgtggcaaccattgcttttggtatggggattgataagtccaatattcgtcaagtgatt
cattttgatttacccaaatcaattgagaattacagccaagaaattggtcgagcaggacgt
gatggtgaagtgtcacaatgtactgttatcgcgaataaatcagggctcaatgttttagaa
aactttgtctttggggatacgccagatcgcagtgctattgcgtatattctgcgtgaaata
caagcccaagatcaacaatgggaaatcatgagtggccgtttgtctaaagacagtaatatt
cgtttattgccacttaaaacattattagtctatcttgaaatccgccaaattattgaaccg
atgtttacttatttcgcagattatcgttacaaaatgaatatttctcagtatgaaatagcc
caacgctttcaaggtgagcgccgacaatttattgaaacaatttttgcgtgttcgcctaaa
gcgcgagtatggcatacattggatatggatgcgttatggcaaggctatcaagtcgataga
aagcgagtggtggcagccattgactatttaaacgaacaaggttggatcacccttgaaagt
aaacaaatgaccgatgtgtatcgcataaatcaacaccattttgatattgaggtagaaaca
gaagccctttaccaattatttcagcaaaaagagcacagtgaaattaatcgtattgaaaat
atgattgccttttttgaaagtaaaagttgtttaagtcataaactagccagctatttcgcc
gatcatcatgcaccaaaacaatgcggtcattgttctgtttgccgaggtaaaaccatcacc
ttaccagcattaccaacactaccagagattaccgatcaacaaataacaatgtgggctgat
agctttattcaacgaaatgacagtgcgccatctatggcagccatcactcgttttttacat
ggcatgagcacgcctctcaatagtaaaataaaagcaaaacagcttgaaggatttggcgta
ttagaagcttatccatttcaacaaactttcgatcatatttgccgcttataccatggcaac
tgttga
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