Photobacterium piscicola: ACJZU6_17870
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Entry
ACJZU6_17870 CDS
T11087
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ppil Photobacterium piscicola
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppil03016
]
ACJZU6_17870
Enzymes [BR:
ppil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACJZU6_17870
Transfer RNA biogenesis [BR:
ppil03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ACJZU6_17870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
XLM59549
LinkDB
All DBs
Position
2:complement(735976..737988)
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AA seq
670 aa
AA seq
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MFQDNPLLAQLKKQIQETLPKKEGYIKATDRGFGFLETDNKESIFIPPVYMKNVMHGDRV
IAVLRTEKEREVAEPQELVEQSITRFIGRVKLIRNRLHIIPDHPQLKEAIRARAAKGINP
ETLKEGDWVVAELTRHPLAGSNQPFFCDVTQKITDSNDKIAPWWVTLARHQLPNAEPAPQ
DSWTMLDEGIERQDLTDLPFITIDGESTKDMDDALYTVAKDDGSYEITIAIADPTSYIAV
GDKMDDEARERGFTIYLPGRNIPMLPRELSDELCSLIENEKRPVLCCRVSIDNTGVIQND
ITFFGAWIKSQGRLSYNNVSDFLENGHCDEWTPSAVIEQQIVALQGFATLRSDWRMANAV
VFPDRPDYRFELSEDNDVVAIHTDLRRIANRMIEEAMITANICAGRALQEKFATGVFNVH
SGFNQEKLDAAMEFITNAEAPFTKEEIVTLEGFSALRRWLNTLDSTYLDNRLRKFQAYSE
VANTPAPHYAMGLDVYATWTSPIRKYGDMINHRLLKALITGNEPTQKPDDNVGDEIANHR
RHHRMAERDVSDWLYVRLLKDAVKNETVFKAEIFDINRAGMRVRLLENGAAAFIPGSLIV
DNKERIVCSGELGIISIDGVKEYQLGDTFEVKLAEVRAATRQLVAKPVQQYPAPEVTSVP
EQATDAPQKA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgttagcacagctaaaaaagcaaatacaagaaacacttcct
aagaaggaaggttacatcaaagcgaccgatcgtggctttggctttctagaaactgataac
aaagaaagcatcttcattccaccggtatacatgaaaaacgttatgcacggtgaccgtgtt
atcgccgttcttcgtaccgaaaaagagcgcgaagttgctgagccacaagagcttgttgaa
caatctattacacgcttcattggccgtgtaaaactgattcgtaatcgcctacatatcatt
ccagatcacccacagttaaaagaagcgattagagcacgtgccgcaaaaggtattaatccc
gaaaccttaaaagaaggtgattgggttgttgctgaactaactcgccaccctcttgctggt
agtaatcaaccattcttctgtgatgtcactcaaaaaatcactgacagtaatgacaaaatt
gcaccttggtgggtgacacttgctcgccaccagctacctaatgcagagccagcaccacaa
gatagctggaccatgcttgatgaaggtattgagcgccaagacttaactgatttgcctttc
attactattgatggtgaatcaaccaaagacatggatgatgccttatatactgtcgctaaa
gatgacggtagctatgaaatcaccattgcgattgctgatcctacctcttacattgccgtt
ggcgataagatggatgatgaagcgcgtgaacgtggattcactatttatcttccaggccgc
aatattccaatgctgccacgtgagctaagtgatgagttatgctcacttatcgaaaatgaa
aaacgtccagttctatgctgccgtgtttctatcgataatacgggtgttattcagaatgac
atcactttctttggtgcatggatcaaatctcaaggtcgtttatcttacaacaatgtgtct
gatttccttgaaaatggccattgtgatgaatggacaccaagcgctgttatcgaacaacaa
atcgttgctctacaaggttttgcaacgttacgttctgattggcgcatggcaaatgccgtg
gtattcccagatcgtcccgattaccgctttgagttaagtgaagataacgatgttgtcgct
attcacaccgacttacgccgtattgctaaccgcatgatcgaagaagcaatgatcaccgcc
aacatttgtgcgggtcgtgctttacaagagaaatttgcaacgggtgtgtttaacgttcat
agcggcttcaatcaagaaaaacttgatgctgcaatggagttcatcaccaatgcagaagca
ccgtttactaaagaagaaatagttactttagaaggctttagtgcattacgtcgttggtta
aacacgctagatagcacctatcttgataaccgcctacgtaaattccaagcttacagtgaa
gtggctaatacacctgcgcctcactatgcaatgggtctagatgtttacgctacatggaca
tcacctattcgtaaatacggcgatatgatcaatcaccgtttactaaaagcattaatcaca
ggcaatgagccaacacaaaagcctgatgataatgtaggtgatgagattgctaatcaccgt
cgtcaccatcgcatggcggaacgtgacgtgtctgattggctatacgtgcgtttacttaaa
gatgcagtgaagaacgaaaccgtctttaaggctgaaatctttgatattaaccgcgcaggt
atgcgtgtacgcctacttgagaatggtgccgcagcctttattccaggttcgctaattgtt
gataataaagagcgtattgtatgtagcggtgaacttggcattatcagcattgatggtgtt
aaagaataccaactaggtgatacttttgaggtgaaactagcggaagttcgcgcagcaaca
cgtcaattagtagcaaaacctgtacaacagtacccagcaccagaagtaacatcagtaccg
gaacaagcaacagacgcaccacaaaaagcataa
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