Photobacterium piscicola: ACJZU6_17875
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Entry
ACJZU6_17875 CDS
T11087
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppil Photobacterium piscicola
Pathway
ppil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJZU6_17875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppil03019
]
ACJZU6_17875
03009 Ribosome biogenesis [BR:
ppil03009
]
ACJZU6_17875
Enzymes [BR:
ppil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACJZU6_17875
Messenger RNA biogenesis [BR:
ppil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACJZU6_17875
Ribosome biogenesis [BR:
ppil03009
]
Prokaryotic type
rRNA helicases
ACJZU6_17875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XLM59550
LinkDB
All DBs
Position
2:738733..740688
Genome browser
AA seq
651 aa
AA seq
DB search
MQETVTEFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGTDALGKAQTGTGKTAAF
SLPVLNKVNLSQHKPQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVKDLISRKQLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPET
AQRVLFSATMPPIVKEIVDRFLRDPARIDVAGENRTVSQVSQQFWVVKGVEKDEAMSRLL
ETEDTDASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV
ATDVVARGLDVARITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTI
ERVTKSRMEEIQLPLRDLVAASRLNRLGEELAAQKEQTNVDAFVELVAKLQESIDVDAAT
LAAMLLQRQQGNRPLFYKGPDPMIAAIERESQRRERRGDRDDRGSDRRGDRPDRGERRGE
RGGERGERRTFNSADWDTYQLQVGREQGVQVKDIVGAIANELGLSKEFIGAIKLAPSHTF
VQLPKKMTAEVAAQLKKLRIRQNDVKAVVVEGEVLREHRPRTGNRDGNRGGERTGHRGSR
DGNREGNRGGERGGERRFDRNRGNDSRGGYRGNRDGAAARPAGDRKPRTDA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaactgttacagaatttcgccaattagatttggccgacacgcttttatccgca
ctagactctatgggtttcgtatcgcctacacctatccaggcggcgtcaatacctctactt
ttaactggtacggatgcgcttggtaaagcacagactggtactggtaaaacagcagcgttc
tcgttgcctgtactgaacaaagtaaatctttctcagcataagccacaagctattgttatg
gctccaacacgtgagcttgcaattcaggttgctgcagaaattaaagtacttggtcaaaat
atcaaaggccttaaggttcttgaaatttacggcggtgcttcaatcgttgatcaaatgcgt
gcactaaaaaatggtgctcacattgttgttggtactcctggtcgtgttaaagaccttatt
tcacgtaagcaacttcacctagacgaagtatctactttcgttcttgatgaagctgatgaa
atgctaaaaatgggtttcgttgacgacgttacttggatcatggaacaagcaccagaaact
gcacaacgtgtacttttctctgcaactatgcctccaatcgttaaagaaatcgttgatcgt
ttcttacgtgatccagcacgcattgacgttgcaggtgagaaccgtactgtatctcaagta
tctcaacaattttgggttgttaaaggcgtagagaaagacgaagcaatgagccgtcttctt
gaaactgaagatactgatgcatcaatcgtattcgttcgtactcgtcaagatactgagcgt
ctagctgattggttatcttctcgtggctttaaagctgcggcacttcacggtgatattcct
cagtcgctacgtgagcgtactgttgaccatatcaaacgtggcgtgatcgatattctagtt
gcaactgacgttgttgctcgtggccttgacgttgcacgaatcacacacgtattcaactac
gatatcccatttgatgttgagtcatacatccaccgtatcggccgtactggtcgtgctgga
cgtgaaggtaaagcgatcctattggttcgtactaaccaaatccgcatgctacgtactatc
gagcgtgttactaagtctcgtatggaagaaatccaacttcctctacgtgatctagtagct
gcatctcgtctaaaccgtttaggtgaagaactagctgcacagaaagaacaaacaaatgtt
gatgcattcgttgaactagtagcaaaactacaagaatcaatcgatgttgacgcagcaaca
ctagcagcaatgcttcttcaacgccaacaaggtaatcgtcctttattctataaaggtcca
gatccaatgatcgcagctatcgagcgtgaatcacaacgtcgtgagcgtcgtggtgatcgt
gatgaccgtggtagtgatcgtcgtggtgaccgtcctgatcgtggcgaacgtcgcggtgag
cgtggtggtgagcgtggcgaacgtcgcactttcaacagcgctgattgggatacttaccaa
ttacaagttggccgtgagcaaggcgttcaagttaaagatatcgttggcgcaattgcaaac
gaacttggcttaagcaaagagttcatcggtgcaattaaacttgctccttcacatactttt
gttcaacttcctaaaaagatgacagcagaagttgcagcacaactgaagaaactacgtatt
cgccagaatgacgttaaagcagttgttgttgaaggtgaagtactacgtgaacatcgtcca
cgtacaggtaatcgcgacggtaaccgtggcggtgagcgtactggtcatcgtggtagccgt
gacggcaatcgcgaaggcaaccgtggcggtgagcgcggtggcgagcgtcgtttcgatcgc
aaccgtggcaacgatagccgtggtggctaccgtggcaaccgtgatggtgcagcagcacgt
ccagcgggcgaccgtaagccacgcactgacgcttaa
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