Pyramidobacter piscolens: CE91St28_05580
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Entry
CE91St28_05580 CDS
T08073
Name
(GenBank) phosphoesterase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppio
Pyramidobacter piscolens
Pathway
ppio03410
Base excision repair
ppio03430
Mismatch repair
ppio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CE91St28_05580
03430 Mismatch repair
CE91St28_05580
03440 Homologous recombination
CE91St28_05580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppio03400
]
CE91St28_05580
DNA repair and recombination proteins [BR:
ppio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CE91St28_05580
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CE91St28_05580
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CE91St28_05580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
BDF77764
LinkDB
All DBs
Position
609952..611619
Genome browser
AA seq
555 aa
AA seq
DB search
MIPVCSFNDLDIYQPGEKTRDLARRLECSELAAAVLDSRAADEEQFRQLLNVPDLRRQLD
ELFLGRAASAARELWLKAVPGKRVFVYGDYDVDGVSSTVIALELAQQSGAAEAVYYIPDR
RSEGYGLHPANMRRIIADGFETLIVADCGSKDVEAVEMARAAGMDVLIFDHHAVEGDIVR
IDSLVNPQMDGDAEAKRLCATAVLWCWAWQSHILPESRLAGMLQLAALATVSDCMPLGPL
NRSLTREGIKMMRRAPRRGLRELLRSLCPNEPDSMIDENRLSMKVIPCLNAAGRVQVADV
AVNVLSGLGSPMELQRSVDQLLDLNRRRRDISAAICTSINAGLEQGERSQVLFNGSWPVG
ILSAIASRLCSEHNKAFALAAPSGGGIRGTLRVPSGANAVELLKSLDDLLDAWGGHKSAA
GFSVDQLKWPRLERELNSLLQNIKVEKTPEEVIEFEPDRITGAAWDEVQRIGPFGNGNPL
PAFFVPLDARTTYAPLGKRGLHTRVLFGGNALLAFNGAEQIERTEGIRGWIYRPRPNLWQ
GRVSLQYIVEGIVVA
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgatccctgtgtgttcgttcaatgatttggatatttaccagcccggcgaaaagacccgc
gacctcgcccgccggctggaatgttcggagctggccgccgcggtgctggacagccgcgct
gcggacgaagaacagttccggcagctgctgaacgtccctgatcttcgcaggcagttggac
gagctttttctcgggcgcgcggcctcggcggcgcgggagctgtggctgaaagcggtgccc
gggaaaagagttttcgtctacggagattacgatgtggacggcgtctcgtccacggtgatc
gcgctcgaactggcgcagcagagcggcgcggccgaagcggtctattacattcccgaccgc
cgttccgagggctacggcctgcatcctgcaaacatgcgccgcatcatcgccgacggtttc
gagacgctgatcgtggccgactgcggttcgaaagacgtggaagccgtagagatggcgcgc
gctgccgggatggacgtcttgatctttgaccatcacgccgtggagggcgacatcgttcgg
atcgactcgttggtcaatccccagatggacggcgacgccgaggccaaacggctttgcgcg
acggccgttttgtggtgctgggcctggcagtcgcatattttgcccgagagccgcctggcc
ggcatgcttcagctggcagcgctggccacggtgtccgactgcatgccgctggggccgctg
aaccgctcgctgacgcgcgaaggcatcaaaatgatgcgccgcgcgccgcgccgcgggctg
cgcgagctgctgcgctccctgtgcccgaacgaacccgactcgatgatcgacgaaaaccgt
ctgtccatgaaggtgatcccctgtctcaacgccgccgggcgcgtgcaggtggccgacgtg
gcggtcaacgtgctttcggggctgggatcgcctatggaactgcagcgcagcgtcgatcag
ctgctggatctcaaccgccgccgccgcgacatttccgcggcgatctgcacgagcatcaac
gccggtttggagcagggcgagcggtcgcaggtcctgttcaacggcagctggccggtgggg
atcttgagcgccatcgccagccgcctgtgcagcgagcacaacaaggctttcgcgctggcc
gcgccgtcgggcggcgggatccgcggcactctgcgcgtgcccagcggcgccaatgcggtg
gaactgctgaaaagcctcgacgatctgctcgacgcctggggcgggcacaaaagcgccgcg
ggattctccgtcgatcagctcaagtggcctcgtctggagcgggagctgaacagtctgctc
cagaatatcaaagtcgaaaaaacgcccgaagaggtgatcgagttcgagcccgatcggatc
accggcgcggcctgggacgaggtgcagcgcatcggccctttcggcaacggcaaccctttg
ccggcttttttcgtgccgctggacgcccgcacgacctacgcgccgctgggcaagcgcggc
ctgcatacccgtgtgctcttcggcggcaacgcgctgctcgccttcaacggcgccgagcag
atcgaacgcacggaaggcatccgcggctggatttaccgtccccgcccgaatctgtggcag
gggcgcgtcagcctgcagtacatcgttgaaggcattgtggtggcctga
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