Pyramidobacter piscolens: CE91St28_14890
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Entry
CE91St28_14890 CDS
T08073
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppio
Pyramidobacter piscolens
Pathway
ppio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CE91St28_14890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppio03019
]
CE91St28_14890
03009 Ribosome biogenesis [BR:
ppio03009
]
CE91St28_14890
Enzymes [BR:
ppio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CE91St28_14890
Messenger RNA biogenesis [BR:
ppio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CE91St28_14890
Ribosome biogenesis [BR:
ppio03009
]
Prokaryotic type
rRNA helicases
CE91St28_14890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Utp25_C
CMS1
Ned1_M
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDF78695
LinkDB
All DBs
Position
complement(1555894..1557669)
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AA seq
591 aa
AA seq
DB search
MTAASFRDFNLPESFLAALDQRGFTTPTPVQAQVLSQPNLDTDMVVQARTGSGKTLAFLL
PLLSELEGGSKKPRLLVLSPTRELAMQNASESEFLGRIRGVGTASIVGGMSMEHQIFQLR
HGASVVVGTPGRVLDHIRRGTLDLSEIETLVLDEGDNMLDMGFRDELEAILEAAVNRKKT
WLFSATMPDSVFSLCRRYLKEPMRLELNHEEEQHEDIVHRAYLVPSRQRMEALVNILLWE
KPALCLIFCHTKTDTGEVAGRLQEEGLMALALNGDMTQRERSNALESFRTGRIPILVATN
VAARGLDVQGVSHVIQLGLPDNMETFVHRSGRTGRAGHEGSNLLLLTPQESGRFKFMLRS
SEMKVEWLKVPDIQEISVIQRERREESLLEIVPAPEVRAWAESLLERSDDAADLAAKLLS
AAVKDIPTGYALRDSLQRELDQRRERAAIRREGRAGPRFDGERRGIGAERARFRGQGLSI
RIAKGRNDQEWSVGRILGALCAALGVSRDEIGNIKMRDSHTEVELSPAAIASLDDGGRRR
LIDRGLISGASGEPRLGGARRERRFDRSGERLGKRNFERTSERRPRYGRDA
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcagcaagttttagagatttcaatctgcccgagagttttcttgccgctctcgat
caacgaggctttacgacgccgacgccggttcaggcacaggtgctgtcgcagcccaatctg
gacacggacatggtcgtgcaggcgcgcacgggttccggcaagacgctggctttccttctg
cccctgctgagcgaactcgaaggcggaagcaaaaagccccgcctgctggtgctctcgccg
acgcgcgaactggcgatgcagaacgccagcgagtcggaatttttgggccgcatcagaggc
gtcggcacggcgagcatcgtcggcggcatgagcatggagcaccagatcttccagcttcgg
cacggtgcctcggtcgtcgtcggcacgccggggcgcgtcctcgatcatatccgccgcggc
acgctcgacctgagcgagatcgaaacgctggttctcgacgaaggcgacaacatgctcgac
atgggcttccgcgacgagctggaagcgatcctcgaagccgccgtgaaccgcaaaaagacc
tggctcttctcggcgacgatgcccgactcggtgttttcgctctgcaggcgctatctcaaa
gaaccgatgcggctggagctgaaccacgaagaggaacagcacgaagacatcgtgcaccgc
gcgtatctggtgccttcgcgccagcgcatggaagcgctggtcaacatcctgctgtgggaa
aagccggcgctctgcctgatattctgccacaccaagaccgatacgggagaggtggcgggc
cgtcttcaggaggaagggctgatggctctggcgctgaacggcgacatgacgcagcgcgaa
cgcagcaacgccctggaatctttccgcaccgggcgcattcccattctggtcgccaccaac
gtggccgcccgcgggctggacgtgcagggcgtcagccacgtgatccagctggggctcccc
gacaacatggagaccttcgtgcaccgctccgggcgcaccgggcgcgccggacacgaaggc
agcaacctgctgctgctgacgccgcaggaatcggggcgcttcaagttcatgctccgcagc
tccgagatgaaggtcgaatggctgaaagtccccgacattcaggagatcagcgtcattcag
cgcgaacgccgcgaagaatcgctgctggagatcgttcccgcgccggaggtccgcgcctgg
gccgagtcgctcctcgaacgcagcgacgacgcggcggacctcgcggccaagctgctctcg
gccgcagtcaaggacatccccacgggctacgccctgagagactcgctccagcgcgagctt
gaccagcgccgcgagcgcgccgcgatccgccgtgaagggcgcgccggtccacgcttcgac
ggcgagcggcgcggcatcggcgcggaacgggcacggttccgcggccagggactttccatt
cgcatcgccaaggggcggaacgatcaggaatggtccgtcggccgcattctcggcgctctg
tgcgcggcgctcggcgtcagccgtgacgagatcggcaacatcaaaatgcgcgattcgcac
accgaggtggagctgagtcccgcggcgatcgccagcctcgacgacggcggacggcggcgg
ctgatcgaccgcggcctgatctccggagcttccggcgagcccaggctgggcggagcgcgc
cgcgagcggcgcttcgatcgttccggcgaacgtctcggcaaaaggaatttcgagcgcact
tcggagcgccgtcctcgatacgggcgcgacgcctga
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