Pyramidobacter piscolens: CE91St28_17400
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Entry
CE91St28_17400 CDS
T08073
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppio
Pyramidobacter piscolens
Pathway
ppio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CE91St28_17400 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppio03400
]
CE91St28_17400 (mfd)
Enzymes [BR:
ppio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CE91St28_17400 (mfd)
DNA repair and recombination proteins [BR:
ppio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CE91St28_17400 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BDF78946
LinkDB
All DBs
Position
complement(1830386..1833328)
Genome browser
AA seq
980 aa
AA seq
DB search
MPTRQEALALDSDLKVLEVGESRLLEEPPLDSEKLRSGDSFLRRGHTLSGWLNAKSGMLV
ATPGALVTPFRFGKTGLTLAAGKRLGRDTLTSWLAENGYRRAELVWQPGEFAVRGALVDF
FDPSEKAPLRVEFFDEDVESIRFFQPRSQRSFQNLPHFIVRSVNHSEDEQRERSWGNYGT
LLVQPRRLEDSFAAFCELYNALVEEKQRLAPDAFERFLLDTGRLPRLRVSAPGEGVHQDT
LDFGAVPYFRGDLRAARAYVDSHLRAGFKIHIASRNLTGSSFPEQVSFQRGSSLSGGVVV
KDRNEIWISDAELFGINEVAEEEINRGMPLDLEASLKKDQWVIHEKYGVCQLEGTSVENF
GGQDYETIVLRFADNERLIIPTAELFRLTPWNGNGVPELDSLKSKRWRSAWKKAEAQIEA
EAQGLLNLYAQRELADGRAFGRDGDLLKRFEESFPYKETVDQLRAIRDVKHDMERRWPMD
RLIVGDVGYGKTEVVLRAAVKTVENGAQAAIIAPTTVLALQHYRTCVARVGELPIRVELL
SRMIPKKKQKEILDETANGRVDILIGTHRLFQDDIRFKDLGLLIIDEEHRFGVKHKERLK
VAHPGLDVLSLSATPIPRSLSMAMRGIRDISVIATSPRGRGEVFTVTSRWDPSLAHDAVL
RELMRGGQVYYLHNRIDDIEQIAARLANRFPGHRTAVAHGQMGERELEKTMNEFYDGKIE
ILVCTTIIESGLDVPRANTLIVDDVRRLGLAQMHQIRGRIGRRSENAYALFFYESEESGG
QTRERLEALGAVGSQNGGYQLAQRDLEIRGAGEILGTEQHGFKERIGYTLYLKKLKERVD
QLRGIEIKPALVDLAMPLVIPVDYVPQTDLRIGLYRRLLSPLSAQEYEEMQAELLDRYGP
LPEQVQGLLDAALVRGEGGALGIERLRVSEAFVALEGPLGEDIFSPPRWIVKNGARLGAG
GVNGLHAAAGELMKKAVPRP
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
gtgccgacgcggcaggaggcgctggctctggattctgatttgaaagtgctggaggtcgga
gaaagccgcctgctcgaagagccccctttggacagcgagaagctgcggagcggggattct
tttctgcggcgcggccatacgctttcaggatggctcaatgcaaagagcgggatgttggtg
gccaccccgggagcgttggtcacgccgtttcgcttcggcaaaacgggattgactttggcg
gccggcaaacgcttgggacgagacacgctcacgtcctggcttgccgaaaacggctatcgg
cgcgcggagttggtgtggcagcccggcgaatttgcggttcgcggcgctctcgtcgatttt
ttcgatccctctgaaaaggcgcctctgcgcgtcgagttttttgacgaggacgtggaatcg
atccgtttttttcagccccgttcgcagaggagttttcaaaatctgccgcatttcattgtg
cgcagcgtcaatcacagcgaagacgaacagcgcgaaaggagctggggcaattatggaacg
ctgctggtccaacctcgccgactcgaggacagctttgcggctttttgcgagctttataac
gcgcttgtcgaagaaaaacagcggcttgcgcccgacgcgttcgaaaggtttctgctggac
acggggcgtttgccgcgcttaagagtatcggctcccggggagggcgtccaccaggacacc
cttgatttcggcgccgttccttattttcggggcgatctgagagcggcccgcgcgtatgtc
gacagccatctgcgcgcaggattcaagatccatatcgccagccgcaacctgaccggaagt
tcatttcctgagcaggtttcttttcagcggggcagcagtttaagcggcggcgtcgtggtg
aaggaccggaacgagatctggatttccgacgcggagcttttcggcatcaacgaagttgcc
gaggaagagatcaatcgcggcatgcctctggacctcgaggcgagcttgaagaaggaccag
tgggtcatccacgaaaaatatggcgtctgccagcttgaggggacatcggtcgaaaatttt
ggcgggcaggattacgaaaccatcgttctgcggttcgccgacaacgaaagactgattatc
cccaccgctgaacttttccgcctcaccccgtggaacggtaacggcgttcccgagctcgac
agcctcaagtcgaagcgctggcgttcggcatggaaaaaggcggaagcgcaaatcgaagcg
gaagcgcaggggctcctgaatctctacgcccagcgcgaactggccgacgggcgcgctttt
ggacgcgacggcgacctgctgaaacgctttgaggaaagctttccctacaaagaaaccgtc
gatcagcttcgggcgatccgcgacgtcaagcacgacatggaacgccgctggcccatggat
cgtctcattgtcggagacgtcggttacggcaaaacagaggttgtgctgcgcgcggcggtc
aagactgtcgaaaatggcgcgcaagcggcgattattgcgccgacaacggttttggccctc
cagcattatcgcacctgcgtcgccagagtcggcgaacttccgattcgtgtcgagctgctt
tcgcggatgatccccaagaaaaagcagaaggaaattctcgacgaaacggcaaacggccgt
gtcgatatcctgatcggcacccatcgcctttttcaggacgacattcgattcaaagacttg
ggactgctgataatcgacgaagaacaccgttttggcgtcaaacataaagagcggctgaaa
gtggcgcaccccgggctggacgtgctttctctttcggcgacgccgattcccagaagcctc
tccatggcgatgcgcggcatccgggacatttccgtgatcgccacttcgccgcgagggcgc
ggcgaagtctttaccgtgacctcccgatgggatcccagtctggcgcatgacgcggttctc
cgcgagctcatgcgaggcggacaggtatactatctgcataatcgcatcgacgacatagaa
cagatcgcggcgcgtcttgccaaccgtttccccggacaccgcacggccgtcgctcacggg
caaatgggagagcgcgagcttgagaagacgatgaacgaattctatgacggcaaaattgaa
atcctggtgtgcacgacgatcatcgaaagcgggctcgacgtgccgcgggccaacacgctg
atcgtcgacgacgtcaggcgccttggcctggcgcagatgcatcagatacgcggccgcatc
gggcggcgcagcgagaatgcttacgctctgtttttttatgaatccgaagaaagcggcggc
cagacccgcgaacgcctcgaggctttgggcgccgtcggctcgcagaatggcggctatcaa
ctggcgcagcgcgatctcgagatccgcggggcgggcgagattctcggaacggaacagcat
ggcttcaaggaacgcattggttacactctttatctgaaaaaattgaaggaacgcgtcgac
cagctgcgagggatcgaaataaagcccgcgctggtcgatttggccatgccgctggtgatt
cctgtggattatgtaccgcagacggatctgcgcatcgggttgtacagacgcttgttatcg
cccttgagcgctcaggaatacgaggaaatgcaggcggaacttcttgatcgctacggtcct
ttgcccgagcaagttcaggggctgcttgacgcggctctggtccgcggcgaaggcggggct
ctcgggatagagaggcttcgggtctcggaggcgtttgtcgctcttgagggacctttggga
gaggatattttttcgcctccgcgctggatcgtgaaaaacggcgcgcgcctcggcgctggc
ggcgtcaacggactgcatgccgccgccggggaattgatgaaaaaggccgttccccggccg
tga
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