Pseudoalteromonas piscicida: B1L02_00485
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Entry
B1L02_00485 CDS
T04942
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
ppis
Pseudoalteromonas piscicida
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppis03009
]
B1L02_00485
Enzymes [BR:
ppis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B1L02_00485
Ribosome biogenesis [BR:
ppis03009
]
Prokaryotic type
rRNA helicases
B1L02_00485
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
SLFN-g3_helicase
AAA_19
AAA_22
Terminase_3
AAA_30
ZNHIT3_C
Cas3-like_C_2
DUF5645
P-loop_SecA
Helicase_C_2
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
ASD65675
UniProt:
A0AAD0RFM1
LinkDB
All DBs
Position
1:97937..99319
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AA seq
460 aa
AA seq
DB search
MSITSFSQLPLNQALAQRLVDLNYMVPTAVQSVSLAPALTERDLVVKGKTGSGKTLVFSL
ALLNKLQPESNDVQALVLCPTRELADQVAQEIRKVAALIGNIKVQTLCGGTPIEPQTRAL
QHGAHIVVGTPGRVEEHVFNGSLMLTETQTVVFDEADQMLDMGFTETLESILVYVPEVRQ
TLMFSATYPDKIMKLAKQYMREPEFVEAKEEQAHHSIKQTFYKLDNNKMRFNALRVLLMQ
HQPQSCIVFCNTKTETKRLFEELRQTGLACVELHGDLEQGEREWSLLTFANKSANILVAT
DVAARGLDVEEVELVVNYHLALEPQTHIHRVGRTGRGEHKGIAVSLYGEKEAFKIKQLAE
IYGQELKHGTLPSHSLLEKPAYKSNMVTLMIEGGKQQKLRKGDIVGCLTGEEGISVKQIG
KINIYDVQAFVAVKREAVKPALRKLNNSKIKNKRFKALRA
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgatcacctcattttctcaattacctttaaaccaagcgcttgctcagcgccttgta
gatcttaactacatggtgccaacggcagtacagtctgtgagtttagcgccagcactgact
gagcgagatttagtcgtgaaagggaaaactgggtctggtaaaacactggtgttttcactt
gcgctgctgaataagttgcagcctgaaagtaatgatgttcaggctttagtgttatgtcca
acgagagaattggccgaccaagttgcacaagagatcagaaaagttgcggctttaattggt
aacatcaaagtgcaaacgctctgcggaggaacgcccattgagcctcaaacccgagcgttg
caacatggcgcgcatattgtcgttggtacaccaggtcgggttgaagagcatgtttttaat
ggctcactcatgctgactgaaacgcagactgtggtattcgacgaagcggatcagatgttg
gatatgggctttactgaaacgctagaaagcattttagtgtatgtgcctgaagttcgacaa
acactgatgtttagtgcgacctacccagacaagatcatgaaactggcgaagcaatatatg
cgtgagccagagtttgtcgaagcgaaagaagaacaagcacaccacagcattaagcaaacc
ttttataaattagacaacaataaaatgcgctttaacgcactgagagtgctgttaatgcag
caccagccgcaaagctgtatcgttttttgtaacaccaaaactgagactaagcgactattc
gaagaattacgtcaaactggactagcttgcgtcgagttacatggcgatttagagcaaggt
gaacgagagtggtcattgctcacttttgccaacaagagtgccaatattttagttgccacc
gacgttgccgctcgagggctcgatgttgaggaagtcgaacttgtggttaactatcatttg
gcacttgagccgcaaacgcatattcaccgtgttggtcgtacgggccggggtgagcacaaa
ggtattgcagtatctctttatggagaaaaagaagccttcaaaataaaacagttagcggaa
atatatggtcaagagctgaagcatggcacgttgccaagtcattcactgctcgaaaagcca
gcctataagtcgaacatggtgaccctcatgattgaaggtggcaagcagcaaaagctccgt
aaaggagacattgtaggctgcttgaccggtgaagagggcatcagcgttaagcagattggc
aaaataaatatttatgatgtacaagcattcgttgctgtaaaacgtgaggcggtaaagcct
gcgctacgtaagcttaacaatagtaagattaaaaataagcgttttaaagccttacgcgct
taa
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