Pseudoalteromonas piscicida: B1L02_00830
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Entry
B1L02_00830 CDS
T04942
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppis
Pseudoalteromonas piscicida
Pathway
ppis03420
Nucleotide excision repair
ppis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1L02_00830
03430 Mismatch repair
B1L02_00830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppis03400
]
B1L02_00830
Enzymes [BR:
ppis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1L02_00830
DNA repair and recombination proteins [BR:
ppis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1L02_00830
MMR (mismatch excision repair)
Other MMR factors
B1L02_00830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
SAP18
ChrB_N
GREB1_2nd
Motif
Other DBs
NCBI-ProteinID:
ASD65733
UniProt:
A0AAD0W366
LinkDB
All DBs
Position
1:complement(190797..192962)
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEHASPFSIFAV
TFTNKAAKEMRARVEATLNGPVGGMWIGTFHGLAHRMLRAHHREAKLPESFQILDSDDQQ
RMIRRLLKAMNIDEKKWPPKQLSWYISARKDEGLRPKDIQAYDVNEQLMLNVYSAYQDAC
DRAGLVDFAEILLRCYELLQQQPTLLRHYQQRFRHMLVDEFQDTNSIQYLWLRLLAGSDN
NIMIVGDDDQSIYGWRGAKIENIKRFLDDFNAETIRLEQNYRSTATILKASNALIENNAE
RMGKSLWTDGNQGEPISIYAAFNELDEARFVVGKIKSWLQTGNALSDSAVLYRNNAQSRV
LEEALLQEGLKYRIYGGMRFFERQEIKDALSYLRIISNRNDDAAFERVINTPTRGIGDKT
LSHIRDCARHESLSLWDAAKAVLAQKHLAGRAATAVTKFIELVEQLDDKIAELELAQQAQ
TAIEQSGLMAMYQAEKGEKGRARVENLEELISACGQYELPIDEDFTSPLQGFLAYTSLEA
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKHHSPSRFLREIPEDCMEEIRIKTQISRPANSGRFSPS
ISHATFEDSGFNLGQRVLHAKFGAGTVLNYEGAGAQSRIQVSFDDVGSKWLVTAYARLQV
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcagaattactcgacggcctcaacgacaaacagcgcgatgcagtcgccgct
cctctgcaaaacatgttagtgctcgcaggtgcggggtcagggaaaacacgagtactcgtt
catcgtattgcttggcttatgcaggttgaacacgcctctccatttagtatttttgcggta
acctttaccaataaagcagccaaagaaatgcgcgctcgtgttgaagcgacgctcaatggc
cctgttggtggcatgtggataggtactttccatggccttgctcaccgcatgttacgcgcc
caccaccgtgaagctaaattaccagaatcgtttcaaattctagatagcgatgatcagcaa
cgaatgatccgccgtttgctcaaagccatgaatattgacgagaaaaagtggccacctaag
cagttaagctggtacatcagcgcgcgtaaagacgaagggttaagaccaaaagatattcaa
gcatacgatgtcaatgaacagctgatgttgaacgtgtacagcgcttaccaagatgcctgt
gatagggccggtcttgttgacttcgccgagattctattgcgctgctacgagctattgcaa
caacaacctaccttactgcgtcactaccaacaacgcttccgccatatgctagtggacgag
tttcaagataccaacagcattcaatatttatggctacgcctgctagcaggtagtgacaac
aatattatgatcgtaggtgatgacgaccaaagtatttacggctggcgtggtgcaaaaata
gaaaacatcaaacgttttctggacgactttaacgccgaaaccattcgccttgaacaaaat
tatcgttctactgcaaccattctaaaagcatccaacgcgctcattgaaaacaacgcggaa
cgaatgggtaaaagtctctggaccgacggtaaccaaggcgagccgatttcaatttacgcc
gcttttaatgaacttgatgaagcacgctttgtggttggaaaaattaaatcttggctacag
actggcaatgcacttagcgacagcgccgtactctacagaaacaacgcacagtcccgggtg
ttagaagaagccctacttcaagaagggttaaaataccgtatttatggcggtatgcgcttc
ttcgagcgccaagagattaaagatgccctgtcttaccttcgtataatcagcaatcgcaat
gacgacgcagcatttgagcgtgtgataaacacgcctacgcgtggtattggtgataaaaca
ttaagccatatccgcgattgcgcacgtcacgagtcactctcactttgggatgcagctaag
gctgtgcttgcgcaaaaacatctcgcgggacgagcagccacggcggtgacaaaatttatt
gaattggtcgaacagctcgacgataaaattgccgagcttgagctagcacaacaagcgcag
acagccatcgagcagtcaggtctaatggcaatgtatcaggccgagaaaggcgagaaaggc
cgcgctcgagtggaaaatttggaagaattaatcagtgcttgtggtcagtatgagctccct
atcgatgaagatttcacttcccctttacaaggctttttagcctatacctctttagaggct
ggtgaaggtcaggcagacgaacacgaagacgcagtacaaatgatgactctgcactcagcc
aaaggtctcgagtttccattggtctttatggttggggtggaagaaggcatgttcccatcg
cagcaaagtaatgaagagtcgggtcgcttggaagaagagcgccgcttgtgctacgtaggt
atgacgcgtgcaatggataagctgtatattagtcacgcagaaagtcgccgcttgtatggc
caagaaaaacaccacagcccttcaaggttcttacgcgaaattcctgaagattgtatggaa
gaaatccggattaaaacacaaatttctcgtccggctaattcgggtcgattcagtccatca
atcagtcacgcgacctttgaagatagcggctttaatttaggccagcgtgtcctccatgcc
aaatttggtgcaggcacagtacttaactatgaaggtgcaggtgctcaatctcgcattcaa
gttagctttgatgatgttggtagtaagtggttagtaaccgcctatgcaagacttcaagta
ctctaa
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