Pseudoalteromonas piscicida: B1L02_03695
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Entry
B1L02_03695 CDS
T04942
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
ppis
Pseudoalteromonas piscicida
Pathway
ppis03030
DNA replication
ppis03430
Mismatch repair
ppis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B1L02_03695 (holA)
03430 Mismatch repair
B1L02_03695 (holA)
03440 Homologous recombination
B1L02_03695 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppis03032
]
B1L02_03695 (holA)
03400 DNA repair and recombination proteins [BR:
ppis03400
]
B1L02_03695 (holA)
Enzymes [BR:
ppis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B1L02_03695 (holA)
DNA replication proteins [BR:
ppis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
B1L02_03695 (holA)
DNA repair and recombination proteins [BR:
ppis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
B1L02_03695 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
ASD66225
UniProt:
A0AAD0RJM0
LinkDB
All DBs
Position
1:complement(778503..779546)
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AA seq
347 aa
AA seq
DB search
MRCYANQLSNYLSKGLAPFYLVFGEEPFQQGECVLAIRTAAKQQGFDEVIKFALLPGFDW
QELSAQYNSMSLFSARTLIEFDFNEQKVPTQGVAVLKSLAEQVNPDVVVIFKGLGAGQDV
QRTVWFKALEPKGLFVPCYALTGRHLERWFDDECKRLKLSVSPQGKRALLVATEGNLLAT
HQELEKLSLLFGKNPVDEQQLLSGLLNQSKFDIFDLNTGLLSGNPKQIIKVLNKLASDNV
EPASILWTLQNQARTLLGVKTLWQTGTALADAYKKHNVWKNQQTITQQALDRLTLEQMKQ
LLCMMADFDTAYKEARLTAPYQALAHIALAFATPIAMPLPISQSEHV
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgttatgccaatcaactctccaattacctgagtaaggggcttgcgcctttttat
ttggtctttggtgaagaaccctttcagcaaggcgaatgtgtacttgcaattcgaaccgca
gctaagcagcaaggctttgacgaagtcattaaatttgctctgcttcctggatttgactgg
caagagctcagtgctcagtacaacagtatgtccttgttcagtgcgcgtacgctcatcgag
ttcgactttaatgagcaaaaagttcctacacaaggcgttgctgttttaaagtctttggcc
gaacaggtcaatccagatgtcgttgttatttttaaagggctgggtgcgggtcaagatgtt
caacgcactgtttggttcaaagcattagagcctaaaggcctattcgtcccctgctatgcg
ttaacgggccgacatcttgaacgctggtttgacgatgaatgtaagcgactgaagctgtcc
gtgtcaccacaaggaaaacgcgccctcctcgtcgccacagaaggcaacttgcttgcaacg
catcaggagcttgaaaagctctccttactatttggtaaaaacccagttgatgaacagcaa
ttgctgagcggcttattaaatcaatctaagttcgatatctttgatttaaataccggattg
ctaagtggcaaccctaaacaaattatcaaagtattgaacaagctcgccagtgataatgta
gagcctgccagtattctctggaccttgcaaaaccaagcacgcacccttctgggtgttaaa
accttatggcaaaccggcactgcgcttgcggatgcctataaaaagcataatgtttggaaa
aatcagcaaaccatcacgcagcaagcgttagacagattaacgctagagcagatgaaacag
ttgctctgcatgatggcagactttgataccgcatacaaagaagcaaggctcacagcccca
tatcaagcactggcacacatcgctctggcctttgctacacccatcgcaatgccgttacca
attagccagagtgagcatgtatga
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