Pseudoalteromonas piscicida: B1L02_03890
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Entry
B1L02_03890 CDS
T04942
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppis
Pseudoalteromonas piscicida
Pathway
ppis03410
Base excision repair
ppis03430
Mismatch repair
ppis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B1L02_03890 (recJ)
03430 Mismatch repair
B1L02_03890 (recJ)
03440 Homologous recombination
B1L02_03890 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppis03400
]
B1L02_03890 (recJ)
DNA repair and recombination proteins [BR:
ppis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
B1L02_03890 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
B1L02_03890 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B1L02_03890 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ASD66260
UniProt:
A0AAD0RHQ6
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All DBs
Position
1:820598..822328
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AA seq
576 aa
AA seq
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MHTEIKPRERVDDSHLPASLHPVIKQLYAARGVKSVVELDNSAATLHDFKLFKDIELASQ
ILAEALSLQQQVLIVGDFDADGATSTAVLMEGLPQFGFQHVDYLVPDRFSLGYGLSPALA
EQIVAIKPDLVITVDNGISCIRGVEIVKQAGIKVIVTDHHLQGDELPIADAIVNPNRVDC
DFPSKSIAGVGVAFYLLIALRHYLRAQNYFVERNIAMPNLAALLDIVALGTVADVVALDA
NNRTLVYQGLARIRSGQTRPGIQALIEVSNRNNARLSASDFGFALAPRLNAAGRLDDMSL
GIACLLSKDLNQARRIASELDSLNIERREIEQSMQQEAQAVLERLVLKSQEVPDALCLYQ
DDWHQGVIGILAGRLKEKYHRPCIIFAQGDNGEIKGSCRSIEGLHMRDLLESINTQHPEL
IVKFGGHAMAAGLTILESEFALFKQAFEQNVSATLSEEAKQSILLTDGELPGDCFTMDFA
FELQQAGPWGQQFSEPVFQDVFELVQQRIVGDKHLKLVLKHRSGRLVDAIAFNVDVRAWP
NLQATHALFAYQLDINEFRGKYNLQLIVRELQAQSN
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcatacagaaattaaaccaagagagcgggttgatgacagccatttaccggcttcacta
catcccgtgatcaaacagctttatgctgccagaggggttaaatcggtcgttgaactcgat
aatagcgccgcaaccttacacgattttaaattatttaaagacatcgagcttgcaagccaa
attctggctgaagcactttctttgcaacaacaagtgttgattgttggcgactttgacgcc
gatggcgcaacgagcaccgccgtattaatggaggggttgcctcagtttggttttcagcat
gtggattacctcgtgccggatagatttagcttggggtacggcctaagccctgcattggcc
gagcaaatcgtcgccataaaacctgatttggttatcaccgtagataatggtatttcctgt
attcgcggcgttgaaatcgtgaagcaagcgggtattaaagtgattgttaccgatcaccat
ttacaaggcgatgagttaccgattgccgatgcgattgttaatccaaaccgcgttgactgc
gacttcccgtctaagtctatcgcgggcgttggggttgccttttacctactgatagcatta
aggcattacttacgggcgcaaaactattttgtggagcgaaatatcgcgatgccaaatttg
gcggcattattagatattgttgccctaggaaccgtggctgacgttgtggctttggatgcg
aataaccgcacgttggtatatcaagggcttgcacggatccgcagtggtcaaacgcgacca
gggatccaagcgcttattgaagtttctaaccgtaataatgcaagattaagtgccagtgat
tttggctttgcgttagcgccaagactcaatgccgcgggccgtcttgacgatatgagttta
ggtattgcttgcttgttatcaaaagatctaaatcaagctcgccgtattgcttccgagctc
gatagtctaaatatcgaacgccgcgagattgagcagagtatgcagcaagaggcgcaagcg
gtattggagcgcttggtacttaaaagccaagaagtaccagacgccttgtgtttgtatcaa
gatgattggcatcaaggtgtgataggtattctggcgggacgcttaaaagaaaaataccat
cgtccgtgtattatttttgcacagggtgacaatggtgagatcaagggctcgtgccgctcc
attgaagggctacacatgcgagatctattggaatccataaatactcagcatccagagcta
attgtaaagttcggtggtcatgcgatggcagcaggactgaccattctagagtctgaattt
gcgctatttaaacaggcatttgaacaaaatgtcagtgcgacgctgagcgaagaagcaaag
caaagcattctgttgacggacggtgaactaccgggtgattgctttaccatggattttgct
tttgagttacagcaggcgggcccgtgggggcagcaatttagtgagccagtctttcaggat
gtatttgaattagtgcagcaacgtattgttggtgacaaacatctaaaacttgtactgaag
caccgctcaggccgtttggttgatgcgatagcatttaacgttgatgttcgagcgtggcca
aacctccaggcaacccatgcattatttgcttaccaactagatatcaatgagttccgcggt
aagtataacttgcagctcatcgtgcgtgaacttcaagcgcaatcgaattaa
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