Pseudoalteromonas piscicida: B1L02_04430
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Entry
B1L02_04430 CDS
T04942
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppis
Pseudoalteromonas piscicida
Pathway
ppis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1L02_04430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppis03019
]
B1L02_04430
03009 Ribosome biogenesis [BR:
ppis03009
]
B1L02_04430
Enzymes [BR:
ppis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B1L02_04430
Messenger RNA biogenesis [BR:
ppis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B1L02_04430
Ribosome biogenesis [BR:
ppis03009
]
Prokaryotic type
rRNA helicases
B1L02_04430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASD66355
UniProt:
A0AAD0RHN3
LinkDB
All DBs
Position
1:complement(939097..940920)
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AA seq
607 aa
AA seq
DB search
MSEPVTFESLDLSPAILKAVEEQGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNQVDASVKQPQILVLTPTRELAIQVAEAFQQYAKYTKGVEVLALYGGQSYGIQLSA
LRRGAQIIVATPGRLIDHINRKTIDLSGLNALVLDEADEMLRMGFIDDVESIMEKTPEEK
QTCLFSATMPKQIQSICNKYLDNAEQVKITPRNSTVSTIEQVYWRATAHKNKAIVRFLEA
EDYDGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGLLDIVIAT
DVAARGLDVERLSLVVNYDIPQDCEAYVHRIGRTGRAGRQGKAILFVKNNERYLLKNIMR
HTRSDIAQVELPSAKVVEEKRIGALEAKISTALEHKDIEFFSKVASGLAQKLELSQEDLA
AALLCLAQQQTPLKVEDIQIQQRERRERDDRRGERRDRDGSRGERGERGERKSRSRDRAS
GPMDTYRIEVGRDHGVQVKNIVGAIANEADISSKFIGEIRLFNEHSTVQLPQNMPSDVLG
HFKSVHICQRPMNMTKSTHPADQGQGRGEEQRDRKRSFKDPRNGGGDKRRPEGQRREKRE
RKEISFS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctttagacctttcacctgcaattttaaaagcagtc
gaagagcaaggatataaaacaccttctgagatccaagctcaatgtataccgttattgcta
gaaagaaaagacgtactgggactagcgcagacgggtacaggtaaaacggcagcatttgca
ctgccattgttaaaccaagtagacgcatccgttaaacaaccacaaatccttgtgcttacg
ccaacgcgtgagctagctattcaagttgctgaagcatttcagcaatatgctaaatatact
aaaggcgttgaagtattggcgctttatggtggccaaagctacggcattcagctaagtgct
ctacgccgtggtgcccaaattattgtggcaacaccaggtcgtttgattgaccacatcaac
cgcaagacgattgacctttctggtctaaacgcgcttgtgcttgatgaagcagatgaaatg
ctacgcatgggctttatcgatgatgttgaaagcatcatggagaaaacaccggaagagaag
caaacttgtttgttctctgcgactatgcctaagcagatccaatcaatctgtaataagtat
ttagacaacgctgaacaagttaagatcactccgcgaaactctacagtatcaacgatcgag
caagtttactggcgtgcaactgcacacaaaaacaaagctatcgtgcgtttcttagaagcg
gaagattacgacggtgctatcgtgttcgtacgtacacgtaacgacactgttcagcttgca
gagttactagagcgcgaaggcttctcagctgcaccgctcaacggcgacatgaaccaacag
gcgcgtgagcgcacagtagatcgtcttaagagcggcttacttgatatcgttatcgcaaca
gatgttgccgcacgtggtcttgacgtagagcgtctaagcctcgttgttaactacgatatc
ccacaagactgtgaagcttatgttcaccgtatcggtcgtacaggccgtgctggtcgtcaa
ggtaaagcaatcttgttcgttaagaacaacgagcgttacttacttaagaacattatgcgt
catacgcgctctgatattgcacaggttgaattaccaagtgcaaaagtagttgaagaaaag
cgtattggtgcattagaggctaaaatctctacagcgctagagcacaaagacattgagttc
ttctctaaagtggcatcaggacttgctcaaaagctagagctgagccaagaagacttagca
gcagcgctgttgtgtcttgctcagcaacaaacgccgctgaaagttgaagatattcaaatt
caacagcgtgagcgtagagaacgtgacgaccgtcgtggcgagcgccgcgacagagacggt
agccgtggtgaacgtggcgagcgtggtgaacgcaaatctcgtagccgtgaccgtgcatcg
ggtccaatggatacttatcgtatcgaagtgggtcgtgaccatggtgttcaagttaagaac
atcgttggtgctatcgcaaacgaagcggatatctcaagcaagttcatcggtgaaatccgt
ctgttcaatgaacacagtacggtccaattaccgcagaacatgccaagcgatgtgcttggt
cacttcaagagcgttcacatctgtcaacgtcctatgaatatgactaagagtactcaccca
gctgatcaaggtcagggcagaggcgaagagcaaagagaccgcaagcgtagctttaaagac
ccacgtaatggtggtggcgataagcgtcgtcctgaaggtcaaagaagagaaaaacgcgaa
agaaaagaaattagcttttcttaa
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