Pseudoalteromonas piscicida: B1L02_06185
Help
Entry
B1L02_06185 CDS
T04942
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppis
Pseudoalteromonas piscicida
Pathway
ppis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B1L02_06185 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppis03400
]
B1L02_06185 (recD)
Enzymes [BR:
ppis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B1L02_06185 (recD)
DNA repair and recombination proteins [BR:
ppis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B1L02_06185 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
SH3_13
Helicase_RecD
Viral_helicase1
AAA_22
UvrD-helicase
RecD_N
SLFN-g3_helicase
AAA_16
nSTAND3
UvrD_C
AAA_28
NTPase_1
CbiA
AAA_24
TrwB_AAD_bind
DEAD
SRP54
T2SSE
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
ASD66646
UniProt:
A0AAD0RJ63
LinkDB
All DBs
Position
1:1290932..1292809
Genome browser
AA seq
625 aa
AA seq
DB search
MSQLNMDFEAFDHHGFIALLLEHKRVGKADIALAKLLNQQGYDDHFYVFLLLLIAHGRQH
SCLELDSINYQDPFELSYAIADGSVELSPFSSTGIAVAALTQHPAIGEDKPLRLYGNKLY
LARLANYEARLAGHFEMLAKADVTLDEAKLSALLTSFFPANEEDIDWQKVACTLAIIKRF
CVITGGPGTGKTTTVTKLLAILQSLYNSAPLTIKLVAPTGKAAARLSESIIGAKSRLNLP
PALADLLPEQAQTIHRLLGVIPNSVHYRHNQDNPLHVDVLIVDEASMVDLSLMAKLVDAL
PKHARLILLGDKDQLASVDTGNVLSDLCENLTLGQAPHYSQALKAKLAELSKQNLPESGD
TSTDFMLEDNLAFLQKSHRFDSRSGIGQLAFAVNSNNQRQLDSVLRQGYSDIQHHELNSE
TYNALIARAAEQYQRYLLAIHHGESEAIIHSEFASYQLLAAVREGPYGVNELNRRIELKL
SQMGLVQPTGRFYVGMPIMITQNDYQLKLFNGDIGIILRDEQGELQASFIDEQGSVRRFY
PARLPSFDRVYVMTIHKSQGSEFAYTAMILPPIQRAQQGINRQLIYTGITRAKQQFELVA
QYKVLVQGMNRSVSRSSGLRSRLSN
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagccagttaaatatggactttgaggcatttgaccatcacggctttattgcgttattg
cttgagcacaaacgagtcggtaaagccgatatcgcattagctaaattgctgaatcagcaa
ggctacgacgatcacttctatgtatttttactattattaatcgctcatggacgtcagcat
agctgcttagagttagacagtattaattatcaggatccgtttgagctcagctacgcgatt
gcggatggatcagtagagttgtcgccattttcaagcacaggtatagccgttgcagcgctc
acacagcatcctgcaatcggtgaagataagccgcttcggctatacggtaataagctctac
ttggcgagattagcaaattatgaagcaaggcttgcaggacactttgaaatgttggcaaaa
gccgatgttacgctggacgaagcaaaactgagtgcactgttgacgtcgttttttccagcc
aatgaagaagacattgattggcaaaaagtggcttgtacgcttgctatcattaagcgattt
tgtgtcatcacgggtggtcccggtacgggaaaaaccacgacggtcacaaaactgcttgcg
attttacaatcgctttataacagtgccccgttgaccatcaagctagttgcgccaaccggc
aaagccgctgctaggctcagtgagtcaattattggcgcgaaatcgaggttaaatctgccg
ccagcgcttgccgacttactgccggagcaggcgcaaactattcatcgcttgttaggtgtt
attcccaatagcgtgcactatcgtcacaatcaagataacccgctgcatgtagatgtgttg
attgtcgacgaagcatccatggtggacttatcgcttatggcgaagctggtggatgcacta
ccaaaacatgcacggcttattttgcttggtgataaagaccagctcgcatcggtggatacc
ggtaacgtactcagcgacctatgtgaaaacttaacgcttggacaagcaccacattacagt
caggcactgaaagcaaagctagctgagttgagtaaacaaaacctgcctgagtcgggtgat
accagcactgactttatgttggaagataatctggcatttttacaaaaaagtcaccgtttt
gacagtcgaagtgggattggccagttagcatttgccgtaaacagcaacaatcagcggcaa
ttagacagcgtgctgaggcaaggttatagcgatatacagcatcatgaattaaatagtgaa
acctacaatgccttaattgccagagcggcggagcaataccagcgatacctgcttgccatt
catcatggtgagagtgaggccataatacatagcgagtttgccagttatcaattgcttgcg
gccgtgcgagaaggcccttacggtgtgaacgaattaaatcgcagaatagagcttaagctt
agtcaaatgggattggtacaaccgacagggcgattttacgttggtatgcccattatgatc
actcaaaacgattaccagttgaaactatttaacggagatatcgggatcattttacgtgac
gaacagggtgagctacaggcatcatttattgatgagcagggcagcgttaggcgcttttat
cctgccagattgccgagctttgatagagtgtatgtaatgactatccacaaatcgcaaggc
tcggagtttgcttacacggcaatgatactaccaccaattcaacgtgcgcagcaggggata
aaccgccagctcatttatacagggatcacccgagctaaacagcagtttgaattggtggcg
caatataaagtattagtgcagggtatgaatcgaagtgtgagccgcagtagtggtttacga
agccggttatcaaattga
DBGET
integrated database retrieval system
