Pseudoalteromonas piscicida: B1L02_06785
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Entry
B1L02_06785 CDS
T04942
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppis
Pseudoalteromonas piscicida
Pathway
ppis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1L02_06785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppis03019
]
B1L02_06785
03009 Ribosome biogenesis [BR:
ppis03009
]
B1L02_06785
Enzymes [BR:
ppis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B1L02_06785
Messenger RNA biogenesis [BR:
ppis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1L02_06785
Ribosome biogenesis [BR:
ppis03009
]
Prokaryotic type
rRNA processing factors
B1L02_06785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ASD66749
UniProt:
A0AAD0RIW7
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All DBs
Position
1:complement(1425890..1429297)
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AA seq
1135 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAKTYFPDGYTFNGRPNIKDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERIELKEALSRLSVPKGMGLIVRTAGVGKSFEEL
DYDLKALLVHWEAIQNAANSGKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFINRVKLYQNDVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKEAVRTDRARVQIGKISRFGLLEMSRQRLRPSLGEASQHTCPRCDGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVGAYLLNEKRRSVQRIEKRHECHVVIIPNQHLETP
HYEVVRLRKDETTEAASYEQITAPEPELVEIARAQAIVKEEPVLKGVVMPDAPAPAPAPA
PAPASTQTAKPQARKPQAKPAQNGTSLLEKIGQWFKNLFASDSDSDKQEENKSSEDKSSR
DNNRDNRRRNNNNRRRNNNRRRNDQQKETAVESKDENNSNEQRGDNRKRRRPNNRKRQDQ
DKVNRPVKEPVNDNVETVEANDVPVKEAKVKPRRQRRNLRKKVRVEETDAQDTNTSEQTS
AEEVKVEAKPLEQPTQTASEPKAEHKPRQRKARPVADKSEKASTANEQAASRSEQAEVHT
QTEQQEATNVERHEQNDVTEVLSAELSESQSDDENKEGRTRSRRSPRHLRAAGQRRRRQD
TPEKGQAAAFIPVADQAAAEYEAELKAKSSFDSEVQEEVQQAASAVDTQSSPETVTEDSA
PAAVEEATVSETQADAEQHVEAKPAEAPIDENEAQEVEPVKEVETTTAEAPLQQAAQPET
SASADKVVAEEVEAAQPEEAKVVKAEPIADTVDTEQVETAKAEDEAETETAVVEETQASG
AKATPEVQEPVVETTAETEVVAESSPEETLVADTIEAPTQQAANGNSVESRVRFNQAAAA
PMTKAQSVIEDVVVETPSAMPHEQRPTVANSGLGVGSKSPTGRASADMASPAQVD
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctgatcaatgcaacgcagcaagaagaaatgcgcgtggcactggttgac
ggccagcgtctatacgatctagacatagaaagccctggtcacgaacagaaaaaagccaat
atctataagggtaaaattacccgtatcgaaccatccctagaagccgcatttgttgattat
ggcgctgagcgtcacggattccttcctttaaaagaaatcgctaaaacgtatttcccagat
ggctatacattcaatggtcgccctaacatcaaagacgtgatcaaagagggtcaagaagtc
atcgttcaggttgataaggaagaacgaggtcaaaaaggcgcggcactcacaacatttatc
agcgttgctggtagctacttggtattaatgccgaataacccaagagcaggtggtatttca
cgccgtatcgaaggtgatgagcgcattgagctaaaagaagcattaagccgcttaagcgta
cctaaaggtatgggtcttatcgtgcgcacagcgggtgtaggtaaatcttttgaagaactt
gactacgaccttaaggctctgctcgttcattgggaagcaatccaaaacgcggcaaatagt
ggtaaagcacctttcctaattcaccaagaaagtaacgtgatcttccgtgcaattcgcgat
tatttacgtcgtgatatcggtgagatcctaatagataagcctcgtgtttttgaagaagcg
aaggcgcatattgagcgtttccgtccagacttcattaatcgcgtgaagctttatcaaaat
gatgtgccgttatttacacattatcaaattgagagtcagattgagtcagcgttccagcgt
gaagtgcgtttgccttcaggtggctctatcgttattgatccaacagaagcgctcacttct
atcgatatcaactcgtcaaaagcgacgaaaggtggcgatatcgaagagacggcgctgaat
actaacttagaagcagctgacgagattgcacgtcaattacgtttgcgtgacttaggtggc
ttaatcgttatcgactttatcgatatgactccacctcgtcatcagcgtgaagtagagaac
cgcttgaaagaagccgttcgtactgaccgggctcgcgtgcaaataggtaagatctcccgt
ttcggcctattagaaatgtcgcgtcaacgtttgcgtccgtctttaggcgaagcgagccag
catacgtgcccacgctgtgacggccaaggcactatccgctccaatgaatccattgctttg
tctatcttgcgtcttatcgaagaagaagcgataaaggacaataccgcccaggtcaacgct
caagtgcctgttgctgttggtgcttacttgttaaatgaaaagcgtcgttctgtgcaacgc
attgaaaagcgccacgagtgccacgttgttatcatccctaaccaacacctagaaacaccg
cactacgaggtggttaggttgcgtaaagatgaaacaacagaagcggcaagctatgaacag
atcaccgcgccagagccggaattagttgaaatcgctcgagctcaagcaattgtgaaagaa
gagcccgtgttaaaaggtgtcgtcatgcctgatgcaccggcgcctgcacctgcacctgca
cctgctccagcctcgactcaaactgcaaaacctcaagcacgtaagccgcaagcaaaacct
gctcaaaacggcaccagcctgcttgagaagattggtcaatggttcaagaacctgtttgct
agtgacagcgacagtgataaacaagaagaaaacaaatcttctgaagataaatcatcacgc
gataacaaccgtgacaatcgccgtcgcaataataacaaccgtcgtcgtaacaataaccgc
cgtcgtaacgatcagcaaaaagaaacagctgttgaatcgaaagacgaaaataatagtaac
gagcaacgtggtgataaccgcaaacgccgtcgtccaaataacagaaaacgccaagatcag
gacaaagtaaaccgtccggttaaggaacctgtgaacgataacgtcgagacggtcgaggct
aacgacgttccagttaaggaagcgaaagtaaaaccacgcagacaaagacgaaatcttcgc
aagaaagtacgtgtggaagaaaccgatgcacaggataccaacacttcagagcaaactagt
gctgaagaagtgaaagtagaagcgaagccgcttgagcaaccaacgcaaacggcgtctgag
cctaaagctgaacacaagccaaggcagagaaaagcgagacctgttgctgataagtcagag
aaagcgtcaacggctaacgaacaagcagcgtcacgttctgagcaagctgaagtacacacg
caaactgagcagcaagaagcaactaacgttgagcgccacgagcaaaatgatgttaccgag
gtactatctgctgaactttcagagtcgcaaagtgatgacgaaaataaagaaggccgtacg
cgctctcgacgttctccgcgtcacctgagagcggcaggtcaacgtcgccgtcgtcaggat
acgcctgaaaaaggtcaagctgcagcatttatacccgttgcagatcaagcagcagctgag
tacgaagctgagctaaaagcgaaatcttcttttgacagtgaagttcaagaagaagtacag
caagcagcaagtgcagttgatactcaatcatcacctgaaacggtaactgaagacagtgca
cctgcagcagtagaagaagcgaccgtttctgagacgcaagctgacgcagagcaacatgtc
gaagctaaaccagccgaagcaccaattgacgaaaatgaagcgcaagaagtggaacctgta
aaagaagtagagacaaccactgctgaagcgccattgcaacaagctgcacagcctgaaaca
tccgcaagcgctgacaaagtagtcgcagaagaggtagaagctgcgcagccagaagaagca
aaagtagttaaagctgagccaatcgctgacacagtagatactgaacaagtggaaacggcg
aaagctgaagatgaagctgaaactgaaactgcagttgtggaagaaactcaggcttctgga
gctaaggcaacaccagaagtacaggagccagtcgtcgaaacaacagcagaaactgaagta
gtcgctgaatcttcacctgaagagacgcttgtcgctgacaccattgaagcgcctactcaa
caagcagcaaacggcaactcagtagaaagccgagtacgcttcaaccaagcagctgccgcg
ccgatgacgaaagcacaaagtgtaattgaggatgtggttgtcgaaacaccatctgcaatg
ccacatgagcaacgcccgacagtagctaatagcggcttgggtgttggctctaagtcacca
acaggcagagcaagcgccgacatggcctctcctgctcaggttgactaa
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integrated database retrieval system
