Pseudoalteromonas piscicida: B1L02_10040
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Entry
B1L02_10040 CDS
T04942
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppis
Pseudoalteromonas piscicida
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppis03019
]
B1L02_10040
Enzymes [BR:
ppis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B1L02_10040
Messenger RNA biogenesis [BR:
ppis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B1L02_10040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
nSTAND_NTPase5
WHD_HA2
ABC_tran
Zeta_toxin
AAA_23
NNH7
Motif
Other DBs
NCBI-ProteinID:
ASD67319
UniProt:
A0AAD0RHT7
LinkDB
All DBs
Position
1:complement(2133568..2137461)
Genome browser
AA seq
1297 aa
AA seq
DB search
MQVDSLFKELNSCLKKDHFILKKRLHGAKKITDQEKQKQVVAKIAAAIAKSQELKVTRSA
NIPAVEYPEQLPVSQKKDDIKAAIAHNQVVIVAGETGSGKTTQLPKICLELGRGLDGYIG
HTQPRRLAARSVSTRIAEEIGCEMGQEVGFKIRFSDQVSDNTYVKLMTDGILLSEIQQDR
FLNQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPERFSKHFSDAPI
IEVSGRTYPVEVRYRPVEDVDSQNGEAENDQLQGIFDAVDELCAEGPGDILVFMNGEREI
RDTADALAKRNLKGVEILPLYARLSNAEQNRIFAPHSQRRIVLSTNVAETSLTVPGIRYV
IDPGTARISRYSYRTKVQRLPIEAVSQASANQRKGRCGRVASGICIRLYSEDDFLGRPEF
TDPEILRTNLASVILQMLALGLGDISQFPFVQAPDSRNIKDGMSLLEELEAIVPAKRREK
AKLTESGRKLSRLPIDPRLAKMVMSGAQNNALWEAIVITAALSIQDPRERPQDKRAAADE
KHNRFECEHSDFVAYLNLWNYIEAQQQALTRNQFRKQCQKDFLAYMRVREWQDIVYQLTT
VCEELGFKINSSPASDEAVHQSLLSGLLSHIGVKDEKQKQVFKGARNSQFHIFPGSTLFK
KSPKWLMSAELVETSKLYARVNAKIDVNWIAPLAKHLVNSSYSEPHWEKKAGAVIAFEQQ
TLYGLIIVGRKRTVYSDIDPVVSREIFIREALANGQLGQSEGFLSANQKLVEEVQALEDK
ARRRDILVDEEDVVAFYNERIPQDVNNRAAFSKWWRSQKQKDKRFLHMTRDLLMKHDAEH
ITDTHYPDTWQQGHLILPLSYHFDPGQALDGVVVNIPLALLNQVQDEGFDWHIPALRHEL
ICGLIKSLPKTLRRNFVPAPNYADAVLAAVEVMQGSFIEAVANRLLRMTGVKVAESDWDV
SALEPHLKMQFQVVDDKGKVIAHGFDLLALKAKLQGQVTETLSQVAEQGIEQTDIQQWDF
GELPEQYTKKQGNYEIKAFPALVDKKQSTAIELFDNEIKAQAAHQAGLRRLVLLNVPSPV
KYLQQHLPNKAKLGLYFNPFGKVHDLVDDCTQAGVDKLLRVFGEIRDDVAFEKAKEHIRA
ELGDTVVDIAKQVEAVLSIAHSINKRMKGRVDLTMITAHGDIKSQLSGLIFKGFVTAHGA
DKISDILRYMKAIEKRLEKLAVDPNRDRLCVLELEKVATAYQDKLAKIPSGLPVPESLIN
IFWMQQELRVSLFAQTLGTAYPISAKRVLNSIKECEI
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggttgactcgctgttcaaagagctaaattcatgtcttaaaaaggatcacttcatc
ctcaaaaagcgccttcatggtgcgaaaaaaattaccgatcaagaaaagcaaaagcaggta
gtcgcaaaaatagcggctgcgattgcaaaaagccaagaattaaaggtaacaagaagtgcc
aatattcctgcagtagagtatcctgagcaactacccgtcagccagaaaaaagacgacatc
aaggctgccattgcgcacaaccaagtggttattgttgccggtgaaacgggctcggggaag
actacgcagctgcctaagatttgcttagagcttggtagaggcttggatggctatattggt
catacacaacctagaaggctagcggcaagaagcgtatctacccgtatcgcagaggaaatt
ggctgcgagatggggcaagaagttggatttaaaattcgcttctcagatcaagtctctgac
aatacgtacgtaaaactgatgaccgacggtattttgctctcggaaattcaacaagacaga
ttcctcaatcagtacgacacaatcatcattgatgaagcgcacgagcgcagtctgaatatt
gattttattcttggttatttaaagcagttattgccgaagcgtccagatcttaaagtgatt
attacctcagcaaccatagaccctgaacgattttctaaacactttagtgatgcacctatt
atcgaggtgtcagggcgaacttacccagtagaagtgagatatcgtccagttgaagatgtt
gactcgcaaaatggtgaggcggaaaacgaccagttgcagggcatttttgatgcggttgac
gaactttgcgccgaaggacctggagatattctggtatttatgaacggtgagcgtgaaatt
cgtgacaccgctgatgcgctggcaaaacgcaatttaaaaggcgttgagattttacctttg
tatgcgcgcctttctaatgccgaacaaaatcgcatttttgcacctcatagccaacggcgt
atcgtattatctacaaacgttgctgaaacgtcattgaccgtaccaggtattcgctatgtt
atcgacccgggtactgcgagaataagccgctatagttatcgaaccaaagtgcaacgctta
ccgattgaggcggtatcacaagccagtgcaaaccagcgtaaaggtcgatgtgggcgtgtg
gcatccggtatttgtattcgtttatattctgaagacgactttttagggcgccctgagttt
accgaccctgaaattctaagaaccaatttagcttcggttattttgcaaatgctcgcactt
ggacttggtgatataagtcaattcccatttgttcaagcgcctgatagtcgtaatatcaaa
gatggcatgtcgttacttgaagagttggaggcgatagttcctgcaaagcgcagagaaaaa
gccaagctcacagaatcaggtcgcaaactaagccgcttacccatagatccaaggcttgcc
aagatggtgatgtctggggcacaaaacaatgcgctttgggaagcgatagtgatcactgcg
gcactgtcaattcaagacccaagagagcgtcctcaagacaaacgtgcagcagcagacgaa
aaacataatcgttttgagtgcgaacactcagactttgttgcatatctaaatctatggaat
tacatcgaagcgcagcagcaagcactgacgcgtaaccagtttagaaagcaatgccaaaaa
gactttttggcctatatgcgtgtacgtgaatggcaagacattgtatatcagctgactacg
gtatgtgaggagctcggctttaaaataaatagcagtcctgcaagcgatgaagctgtccat
caatcattactaagcggtctgcttagccatattggtgtgaaggacgaaaagcaaaagcaa
gtgtttaaaggcgcacgtaacagccaatttcatattttccccggttcaacactgtttaag
aaaagccctaagtggctgatgtctgcagagcttgtggaaaccagtaaactttatgctcgg
gttaacgccaaaatcgatgtaaattggattgcaccgctcgccaagcatttagttaatagc
agctatagcgaaccgcattgggagaaaaaggctggagcggttatcgcgtttgagcaacaa
accttgtacggcttgatcatcgttggccgcaaacgcactgtgtatagcgatattgatcct
gtggttagccgagagatatttattcgtgaagcgctggcaaatggtcaacttggccagagc
gaaggttttttaagcgcaaaccaaaaattggttgaagaagtgcaggcgcttgaagataaa
gctaggcgtcgcgatatcctagttgacgaagaagatgttgttgcgttttacaacgaacga
attccacaagatgtaaataatcgtgctgcgtttagcaagtggtggcgttcacaaaagcaa
aaagacaaacgttttttgcatatgacgcgcgatctgctcatgaagcatgacgccgaacat
atcacggatacccactaccctgatacgtggcagcaagggcatttgatcttgccgctcagc
tatcactttgacccaggccaagcattagacggcgtggtggtcaatattcctctggcgcta
ttgaaccaagttcaagatgaaggttttgattggcatattcctgcgctcagacatgagctg
atctgtggacttattaagtcactgccgaagaccctaagacgtaactttgtgccggcacca
aactacgccgatgctgtgcttgccgccgttgaggtaatgcaaggttcatttatagaagcg
gtggctaatcgtttactcagaatgacaggtgtcaaagtcgccgagtcagattgggatgtt
agtgcacttgagccgcacttaaaaatgcaatttcaggtagtcgatgataaaggcaaggtg
atagcccatggctttgatttattagcacttaaggcaaagttgcaagggcaagtgaccgag
acgctttcgcaagtagcagagcaaggaatagagcaaacggatattcagcagtgggatttt
ggcgagctgccagagcaatatactaaaaagcaaggaaattatgagattaaggcgttccca
gctttagtcgataaaaagcaaagtacggccatagaactgtttgataacgaaataaaagcc
caagcggcgcatcaagcaggattgcgccgtcttgtgctactcaatgttccgtcgcctgtt
aaatacctacagcaacacttaccaaataaggctaagttaggattgtactttaaccccttt
ggtaaagtgcatgatttggttgatgactgtacgcaagctggggttgataagctgctgcgt
gtatttggcgagatcagagatgacgttgcgtttgaaaaagccaaagaacatattcgagcc
gagctaggcgacaccgtagttgatattgcgaagcaagttgaggcagtgcttagtattgct
cacagtattaacaagcgcatgaaaggcagagtggatctcaccatgatcactgcgcacggc
gacataaaatcccagctatccggtcttatctttaaaggttttgtcaccgctcatggtgct
gacaaaatctctgatattttacgctacatgaaagcgattgaaaaaaggcttgaaaaactt
gcggtagatccaaacagagataggctgtgtgtactagaattggaaaaagttgctacggcc
tatcaagacaaattggcaaaaattccttctggattacctgtacctgagtcgcttataaat
attttttggatgcaacaggaacttcgcgtgtctttatttgcccaaacattaggaacagct
tatccgatttcggctaaacgcgttctgaattcgataaaagagtgcgaaatataa
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