Pseudoalteromonas piscicida: B1L02_11605
Help
Entry
B1L02_11605 CDS
T04942
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppis
Pseudoalteromonas piscicida
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppis03019
]
B1L02_11605 (hrpB)
Enzymes [BR:
ppis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B1L02_11605 (hrpB)
Messenger RNA biogenesis [BR:
ppis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B1L02_11605 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
Flavi_DEAD
AAA_22
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ASD67597
UniProt:
A0AAD0W3M0
LinkDB
All DBs
Position
1:complement(2508233..2510740)
Genome browser
AA seq
835 aa
AA seq
DB search
MLPIEAFIPKIISTLTNDNRLVLQAEPGAGKSTLVPLRLLQADIFSGKKIIMLEPRRVAA
KSIAIYLAKQLGESVGERVGYQIRNEQRVSSNTRLEIVTEGVLTRRLQADPELSDVALII
FDEFHERSIHADLALMLAFEVQQAYRDDLKLLVMSATIDTELLSNYLDGAPKLSCPGKTY
PVEIEYVGKASRYLAEHVLSALRQAFTLQSDGDVLVFLPGQADIQRCIEACQVLEQSNIE
FLPLYGGLPLSEQEKVLSKSASASRRVIFATNIAETSLTIAGITMVIDSGLEKRLNYDVK
SGLSRLDTVMISKASATQRAGRAGRLQAGHCLRLWRESEHHNLSDFQPEEITTTDLSDLA
LELSAWGVTQYKDANWLTQPPMQHFSVACQLNHSLSLVDAHNKILTAGQRALQLGVSPRL
ATMLLQCETPIEQQLACFLAAILSERDILVQANTSDVCERVLALIEFVHDRTSAVKAYRL
HRAAAEQAVKLAKSFAHKLGVTLSSEAITLTNIQTLVPTLLLHAFPDRAAQKRPLGDNRY
LLANGRGVTLRDGDPLQGQAYLIVCDVDGKNKDGLVFLSCVIEKGTLLEQLAPYLSEAVQ
YQLDSKKEAIQGRQQVKYHALVLKEQNLSQIPKEAFAQCVKDILTSEGLGLLNWSAKSYA
WLARAKWLSEQLDSFPQLSEAILIEQLDTWLLPYLTGVNSIKQLKQLDIFNLLQATLTWE
QQQQLEAQAPEFYITPSDKRVAIRYDEHQGPTVSVVLQEMFGQLTSPTLANGQVPVRFEL
LSPAKRPIQTTSDLSNFWQTSYFEVAKEMRGRYPKHRWPDKPLEEKPGRSIKPRG
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
ttgctgccgattgaagccttcatccccaagattatttccaccttaaccaatgataaccgt
ttggtcttacaggccgagcccggcgcaggtaaatcgaccttagtgccgctgcgtttactg
caagctgatattttttccggtaaaaaaataattatgcttgagccacgtcgtgtggcagca
aaatctatcgcgatctatttggccaaacaactgggcgaatcggtcggtgagcgagtcggt
tatcaaattcgaaacgagcaacgtgtttcatccaacacccgcttggaaatcgtcaccgaa
ggcgtgttgacgcgccgtcttcaagcggatcctgaactcagtgatgttgcacttattatt
ttcgatgaattccatgagcgttctattcatgcggatttagccttaatgctcgcgtttgaa
gtgcaacaagcatatcgtgacgacctcaaattgctagtgatgtccgccaccatagacact
gaactattatcgaattatctggatggcgcaccaaagttatcttgcccaggtaaaacctat
cctgttgaaattgaatatgtcggtaaagcgagtcgttacttggcggagcatgtattaagt
gcgctgcgccaagctttcactctgcaaagcgatggcgatgtactggtgtttctacccgga
caggcggatattcaacgctgcattgaggcttgccaagtgcttgaacaaagtaatattgag
tttctgcctttgtacggcggattacccttatctgagcaagaaaaggtactcagtaaaagt
gccagcgcatcaagacgtgttatttttgcgaccaatattgctgagaccagtttgaccatc
gcagggatcactatggttatagattctggccttgaaaaacgcttgaactatgacgttaaa
agtggtttgtcgcggctcgatacggtgatgatctcaaaggcatcagcaacacaacgtgct
gggcgtgcgggtcgtttacaagcgggtcattgtttacgcctttggcgcgaaagtgagcat
cataatttaagtgactttcagccagaagaaataaccaccaccgacctttctgacttagcg
ttagagctcagtgcgtggggagtgacacaatacaaagacgcgaattggctaacacagcca
ccgatgcaacatttttcggtggcctgtcaattgaatcattcgcttagcttggtcgatgcg
cataataaaatattaactgccggacagcgcgccctacaactaggagtctcgcctcgtctc
gcaaccatgctgctgcagtgtgagacgccaattgagcaacaacttgcttgttttttggcg
gcaatattgagtgagcgagatattttagtgcaagccaacactagtgatgtatgtgagcgc
gtattggcattgattgaatttgttcatgaccgtactagtgccgtcaaagcatatcgctta
cacagagccgctgcagagcaggccgtaaagttggccaaatcattcgcacacaagctagga
gttacgctcagcagtgaagcaatcaccctcacaaatattcaaaccttagtgcctacttta
ttgcttcatgcctttcctgacagagctgcacaaaagcgtcctttaggggataaccgctac
ttgcttgctaatggtcggggcgtgacgttacgggatggcgatccgttgcaaggtcaggct
tatttgattgtttgtgatgtggatggcaaaaataaggatggcttggtatttctaagctgc
gtaatcgaaaagggcacattacttgagcaactagcgccatacttgagtgaggcagtgcag
tatcaactggatagtaaaaaagaagcgattcagggccggcaacaagttaaatatcatgct
ctagtattaaaagagcaaaacctgagtcagatccccaaagaagcgtttgcccaatgtgtg
aaggatattctcacatcggaagggcttggtctgctcaattggtccgcaaaaagttacgct
tggctcgctcgagctaaatggttaagtgagcagctggatagcttcccacagctatctgag
gcaattttgatagaacagcttgatacttggttgttaccctatttgacgggcgtaaacagc
atcaaacaactgaagcaactggatatatttaacctgcttcaagcgacactcacttgggag
cagcaacagcaacttgaagcgcaggcacctgaattttatattacgccaagcgataagcga
gttgcgatccgctatgatgagcaccaaggtccaacggtctctgtggttttgcaagaaatg
tttggtcaattgacgtcgccaacactcgccaacggtcaagtccctgtgcgatttgagctg
ttatctccagcgaaaagaccaattcaaactaccagtgatttgagcaacttttggcaaact
tcttattttgaggtggccaaagagatgcgtggtcgatatccaaaacaccgatggccagat
aaaccgcttgaggaaaaacccggccgatccataaagcctagaggatag
DBGET
integrated database retrieval system
