Pseudoalteromonas piscicida: B1L02_12720
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Entry
B1L02_12720 CDS
T04942
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppis
Pseudoalteromonas piscicida
Pathway
ppis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1L02_12720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppis03019
]
B1L02_12720
Enzymes [BR:
ppis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B1L02_12720
Messenger RNA biogenesis [BR:
ppis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B1L02_12720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
Gag_p24
Sacchrp_dh_NADP
AAA_22
RR_TM4-6
Motif
Other DBs
NCBI-ProteinID:
ASD67795
UniProt:
A0AAD0RFP1
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All DBs
Position
1:2734718..2736139
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AA seq
473 aa
AA seq
DB search
MSFSHLGLAPEINQAVVEQGYDKPTPIQEQAIPAILEGRDVMAAAQTGTGKTAGFTLPLL
QKLIAGTKPRANNVRALILTPTRELADQVWQSVTLYSKHLPISSEVVYGGVKINPQMMRL
RKGVDVLVATPGRLLDLYQQNAVKFDDLEVLVLDEADRMLDMGFIHDIKRIIKALPSRRQ
NLMFSATFSEEIRALAKGLIHDPVEVSVAPANSTAKSVTQWVYPVDKSKRTGLLKHLVQT
HDWQQVLVFTRTKHGANRLVKDLEKDKINAAAIHGNKSQSARMKALAGFKNGEVRVLVAT
DIVARGLDIQELPHVVNFDLPNVYEDYVHRIGRTGRAGATGEAISFVTQETASDLFGIER
LIQQLVPRKVEPGFEPQLAVPESKLDTRPIKPKKPKKPKKSKVDEAEQTPSAQPKNKPKQ
NSGPRNNKPSGNGKPASNNNGNRRRRPSSSANKPKSQHSGDKRTPRQKPTAGN
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgagctttagccacctaggtttagccccagaaataaatcaagccgttgtcgaacaaggt
tacgacaaaccgacccccattcaagagcaagccattcctgctattttagaaggcagagac
gtgatggctgcggcgcaaacgggtacaggtaaaactgcgggctttacattacctttgttg
caaaagctaattgcaggtactaagccacgtgcgaataacgtacgcgcgctaattctaacg
cctaccagagaacttgctgatcaagtatggcaaagcgttacgctgtacagtaagcatctt
cctatcagctctgaagtagtttacggcggtgtgaagatcaacccgcaaatgatgaggctg
cgtaaaggcgttgatgttttagtggcaacacctggccgattactcgatctttaccagcaa
aatgcggtgaagtttgacgaccttgaagtgctggtattggatgaagccgaccgtatgtta
gacatgggcttcatccatgatatcaagcgcatcattaaagcattaccaagccgcagacaa
aatttaatgttttctgcgactttctctgaagaaattagagccttggcgaaagggttaatc
catgacccggtagaagtttctgttgcacctgcaaacagcacagctaaaagcgtgactcaa
tgggtgtatccagtagacaaaagtaaacgtacaggtttactaaaacatttagtccaaacg
catgattggcaacaagtgttggtatttacccgcacaaaacacggtgccaaccgcttggtt
aaagatctggaaaaagacaagatcaacgccgctgcaatccatggtaataaaagccaaagt
gctcgcatgaaagcccttgcaggttttaaaaacggtgaagtacgtgtacttgttgccact
gatattgtggcaagaggcttagatattcaagagctgcctcatgtcgtgaactttgatctg
ccaaatgtttacgaagattatgttcaccgcattggtagaacaggccgcgctggtgcgacg
ggagaagctatctcatttgttacgcaagagaccgcgagcgacttatttggcattgaacga
ttaattcaacagctggtgccgcgtaaagtggaaccaggattcgaaccgcaacttgccgta
ccagaatcaaagttggatacgcgcccaatcaagccgaaaaagccaaagaaaccgaaaaag
tcaaaggtggacgaagccgagcaaacaccttccgctcagccgaaaaacaaacctaagcaa
aattcaggccctcgcaacaataaaccgagtggtaacggcaaacctgctagtaacaacaat
ggtaaccgcagacgtcgcccatcatcgtctgcaaacaagccaaagagccaacactctgga
gacaagcgtaccccacgtcagaagcctactgctggcaattaa
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